Carbohydrate-active enzymes involved in rice cell wall metabolism

被引:1
|
作者
De Coninck, Tibo [1 ,2 ]
Desmet, Tom [2 ]
Van Damme, Els J. M. [1 ]
机构
[1] Univ Ghent, Dept Biotechnol, Lab Biochem & Glycobiol, Proeftuinstr 86, B-9000 Ghent, Belgium
[2] Univ Ghent, Ctr Synthet Biol, Dept Biotechnol, Coupure Links 653, B-9000 Ghent, Belgium
关键词
Arabinogalactan; CAZymes; cellulose; cell wall; glucomannan; hemicellulose; lignin; pectin; rice; xylan; xyloglucan; CELLULOSE SYNTHASE-LIKE; GENOME-WIDE IDENTIFICATION; HORDEUM-VULGARE ENDOSPERM; ENDO-BETA-MANNANASES; PLANT-CELL; ARABINOGALACTAN-PROTEINS; EXPRESSION ANALYSIS; XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASES; BIOCHEMICAL-CHARACTERIZATION; PECTIN METHYLESTERASES;
D O I
10.1093/jxb/erae295
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
Plant cell walls are complex, multifunctional structures, built up of polysaccharides and proteins. The configuration and abundance of cell wall constituents determine cellular elongation and plant growth. The emphasis of this review is on rice, a staple crop with economic importance, serving as model for grasses/cereals. Recent advancements have contributed to a better understanding of the grass/cereal cell wall. This review brings together current knowledge of the organization and metabolism of the rice cell wall, and addresses gaps in the information regarding the cell wall and enzymes involved. Several cell wall fractions, including cellulose, mixed-linkage glucans, and glucuronoarabinoxylans, are well understood in rice and other grasses/grains. Conversely, there are still open questions and missing links in relation to xyloglucans, glucomannans, pectin, lignin, and arabinogalactan proteins. There is still a large and untapped potential to identify carbohydrate-active enzymes (CAZymes), to characterize their activity, and to elucidate their involvement in the metabolism of the mentioned cell wall fractions. This review highlights the involvement of carbohydrate-active enzymes in rice cell wall metabolism, providing an update of current understanding with the aim of demarcating research areas with potential for further investigations. This review provides a new insight into the organization of the rice cell wall and the involvement of carbohydrate-active enzymes in the metabolism of (hemi)cellulose, pectin, lignin, and cell wall proteins.
引用
收藏
页码:6206 / 6227
页数:22
相关论文
共 50 条
  • [41] Lentinus crinitus RESPONSE TO BLUE LIGHT ON CARBOHYDRATE-ACTIVE ENZYMES
    Marim, Renan Alberto
    Avelino, Katielle Vieira
    Wietzikoski Halabura, Marisangela Isabel
    Araujo, Nelma Lopes
    Santana, Thiago Teodoro
    Linde, Giani Andrea
    Colauto, Nelson Barros
    do Valle, Juliana Silveira
    BIOSCIENCE JOURNAL, 2020, 36 (03): : 924 - 931
  • [42] The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics
    Cantarel, Brandi L.
    Coutinho, Pedro M.
    Rancurel, Corinne
    Bernard, Thomas
    Lombard, Vincent
    Henrissat, Bernard
    NUCLEIC ACIDS RESEARCH, 2009, 37 : D233 - D238
  • [43] Homology to peptide pattern for annotation of carbohydrate-active enzymes and prediction of function
    Busk, P. K.
    Pilgaard, B.
    Lezyk, M. J.
    Meyer, A. S.
    Lange, L.
    BMC BIOINFORMATICS, 2017, 18
  • [44] Highly variable domain architecture in carbohydrate-active enzymes highlights Streptomyces as promising resource for rice straw bioconversion
    Sidar, Andika
    Voshol, Gerben P.
    El-Masoudi, Ahmed
    Vijgenboom, Erik
    Punt, Peter J.
    BIORESOURCE TECHNOLOGY REPORTS, 2024, 25
  • [45] Discovery of hyperstable carbohydrate-active enzymes through metagenomics of extreme environments
    Strazzulli, Andrea
    Cobucci-Ponzano, Beatrice
    Iacono, Roberta
    Giglio, Rosa
    Maurelli, Luisa
    Curci, Nicola
    Schiano-di-Cola, Corinna
    Santangelo, Annalisa
    Contursi, Patrizia
    Lombard, Vincent
    Henrissat, Bernard
    Lauro, Federico M.
    Fontes, Carlos M. G. A.
    Moracci, Marco
    FEBS JOURNAL, 2020, 287 (06) : 1116 - 1137
  • [46] Oral and Gut Microbial Carbohydrate-Active Enzymes Landscape in Health and Disease
    Onyango, Stanley O.
    Juma, John
    De Paepe, Kim
    van de Wiele, Tom
    FRONTIERS IN MICROBIOLOGY, 2021, 12
  • [47] Metagenomic analysis of carbohydrate-active enzymes and their contribution to marine sediment biodiversity
    Lopez-Sanchez, Rafael
    Rebollar, Eria A.
    Gutierrez-Rios, Rosa Maria
    Garciarrubio, Alejandro
    Juarez, Katy
    Segovia, Lorenzo
    WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY, 2024, 40 (03):
  • [48] Homology to peptide pattern for annotation of carbohydrate-active enzymes and prediction of function
    P. K. Busk
    B. Pilgaard
    M. J. Lezyk
    A. S. Meyer
    L. Lange
    BMC Bioinformatics, 18
  • [49] Discovery of hyperstable carbohydrate-active enzymes through metagenomics of extreme environments
    Iacono, R.
    Strazzulli, A.
    Ponzano, B. Cobucci
    Giglio, R.
    Maurelli, L.
    Curci, N.
    di Cola, C. Schiano
    Santangelo, A.
    Contursi, P.
    Lombard, V.
    Henrissat, B.
    Lauro, F. M.
    Fontes, C. M.
    Moracci, M.
    FEBS OPEN BIO, 2021, 11 : 398 - 398
  • [50] Metagenomic analysis of carbohydrate-active enzymes and their contribution to marine sediment biodiversity
    Rafael López-Sánchez
    Eria A. Rebollar
    Rosa María Gutiérrez-Ríos
    Alejandro Garciarrubio
    Katy Juarez
    Lorenzo Segovia
    World Journal of Microbiology and Biotechnology, 2024, 40