A novel Co(II) complex with sulfamethoxazole ligand: Isostructuralism, non-covalent interactions, Hirshfeld surfaces, crystal voids and energy calculations

被引:0
|
作者
Di Santo, Alejandro [1 ]
Perez, Hiram [2 ]
Echeverria, Gustavo A. [3 ,4 ]
Piro, Oscar E. [3 ,4 ]
Frontera, Antonio [5 ]
Gil, Diego M. [6 ]
机构
[1] Univ Nacl Tucuman, Fac Bioquim Quim & Farm, Inst Quim Fis, San Lorenzo 456,T4000CAN, San Miguel De Tucuman, Argentina
[2] Univ La Habana, Fac Quim, Dept Quim Gen & Inorgan, Havana 10400, Cuba
[3] Univ Nacl La Plata, Dept Fis, Fac Ciencias Exactas, CC 67, RA-1900 La Plata, Argentina
[4] Consejo Nacl Invest Cient & Tecn, CT La Plata, Inst IFLP, CC 67, RA-1900 La Plata, Argentina
[5] Univ Illes Balears, Dept Quim, Crta Valldemossa Km 7-5, Palma de Mallorca 07122, Baleares, Spain
[6] Univ Nacl Tucuman, Fac Bioquim Quim & Farm, Inst Quim Organ, INBIOFAL,CONICET,UNT, Ayacucho 471,T4000INI, San Miguel De Tucuman, Argentina
关键词
Isostructurality; Intermolecular energies; Crystal voids; Hirshfeld surfaces; QTAIM; Non-covalent interactions; EXPLORING INTERMOLECULAR INTERACTIONS; SPECTROSCOPIC CHARACTERIZATION; QUANTITATIVE-ANALYSIS; MODEL ENERGIES; SULFONAMIDE; ANTIBACTERIAL; DERIVATIVES; CRYSTALEXPLORER; ANTIFUNGAL; ANTICANCER;
D O I
10.1016/j.molstruc.2024.139800
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The crystal structure of [Co(H2O)(6)][Co(SMX)(3)](2) complex (SMX = sulfamethoxazole), hereafter CoSMXW, has been solved by X-ray diffraction methods. The complex CoSMXW was characterized by Infrared (IR), Raman, and UV-Vis spectroscopies. A comparison with the analogous Mn(II) complex, [Mn(H2O)(6)][Mn(SMX)(3)](2) (CSD refcode AJIFUW), indicates 3D isostructurality and packing similarity, as evident from X-ray diffraction and geometric descriptors such as dissimilarity index (X = 2.0 from XPac) and packing similarity (PSab = 0.3070 from CrystalCMP), respectively. This represents the first case of isostructurality observed among eleven metal complexes of sulfamethoxazole reported in the literature. A study of non-covalent interactions shows presence of structural motifs involving N-(HO)-O-& mldr; and N-(HS)-S-& mldr; (Motif I), N-(HO)-O-& mldr; (Motif II), O-(HO)-O-& mldr; and O-(HN)-N-& mldr; (Motif III) H-bonds, as well as C-H-& mldr;pi contacts (Motif IV) for [Co(H2O)(6)][Co(SMX)(3)](2) and AJIFUW. Energy analysis using CrystalExplorer indicates that the strongest dimer involves Motifs I and II with total energy of -70.3 kcal/mol for CoSMXW, which is only 2.1 kcal/mol longer than that for AJIFUW. Hirshfeld surface (HS) analysis reveals meaningless effect of metal replacement on the intermolecular contacts, confirming the energetic results. The volume of the crystal voids and the percentage of free space were calculated as 862.35 & Aring;(3) and 11.8 % for CoSMXW, and 911.42 & Aring;(3) and 12.2 % for AJIFUW. 3D topology and hierarchy of interactions were analyzed with energy framework diagrams. Further, structural motifs, HS, crystal voids and intermolecular energies for the SMX free ligand (CSD refcode SLFNMB08) were also studied. Finally, the present study was complemented with DFT calculations to evaluate the strength and nature of the non-covalent interactions by using the quantum theory of atoms in molecules (QTAIM) and NCIplots computational tools. In addition, we have used the potential energy density predictor obtained from QTAIM analysis to investigate the relative contribution of each interaction to the formation of the assemblies.
引用
收藏
页数:12
相关论文
共 50 条
  • [41] Structure and non-covalent interactions of 1,3-difluoropropane and its complex with water explored by rotational spectroscopy and quantum chemical calculations
    Lu, Tao
    Zhang, Jiaqi
    Chen, Junhua
    Gou, Qian
    Xia, Zhining
    Feng, Gang
    JOURNAL OF CHEMICAL PHYSICS, 2019, 150 (06):
  • [42] Coordination polymers of manganese(II) and cobalt(II) of a flexible tetradentate pyridine amide ligand: 1D zigzag network and non-covalent interactions
    Jacob, Wilson
    Mukherjee, Rabindranath
    INORGANICA CHIMICA ACTA, 2008, 361 (05) : 1231 - 1238
  • [43] Non-covalent interactions governing the supramolecular assembly of copper(II) complexes with hydrazone-type ligand: Experimental and quantum chemical study
    Singh, Y.
    Patel, Ram N.
    Patel, Satish K.
    Jadeja, R. N.
    Patel, Abhay K.
    Patel, Neetu
    Roy, H.
    Kumar, P.
    Butcher, R. J.
    Jasinski, Jerry P.
    Cortijo, M.
    Herrero, S.
    POLYHEDRON, 2021, 200
  • [44] Synthesis, structure, physicochemical characterization and theoretical evaluation of non-covalent interaction energy of a polymeric copper(II)-hydrazone complex
    Sadhukhan, Dipali
    Manit, Monami
    Bauza, Antonio
    Frontera, Antonio
    Garribba, Eugenio
    Gomez-Garcia, Carlos J.
    INORGANICA CHIMICA ACTA, 2019, 484 : 95 - 103
  • [45] How do non-covalent interactions affect the sensitivity of high-energy materials? Analysis of crystal structures of nitroaromatic molecules
    Kretic, D. S.
    Dunovic, A. B.
    Veljkovic, I. S.
    Veljkovic, D. Z.
    ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES, 2024, 80
  • [46] An insight into the non-covalent Pb•••S and S•••S interactions in the solid-state structure of a hemidirected lead(II) complex
    Mirdya, Saikat
    Banerjee, Snehasis
    Chattopadhyay, Shouvik
    CRYSTENGCOMM, 2020, 22 (02) : 237 - 247
  • [47] Harnessing of non-covalent interaction in novel [Ni(en)3](2-chlorophenylacetate)2 second sphere complex: Synthesis, characterization, single crystal structural, DFT, and Hirshfeld surface analysis
    Bansal, Priti
    Saini, Anju
    Kaur, Parmjeet
    Kaur, Paramjeet
    Kumar, Santosh
    Kandwal, Pankaj
    Ferretti, Valeria
    STRUCTURAL CHEMISTRY, 2024, 35 (05) : 1493 - 1507
  • [48] Lewis base controlled supramolecular architectures via non-covalent interactions of dioxomolybdenum(VI) complexes with an ONS donor ligand: DFT calculations and biological study
    Biswal, Debanjana
    Pramanik, Nikhil Ranjan
    Chakrabarti, Syamal
    Chakraborty, Nirmalya
    Acharya, Krishnendu
    Mandal, Sudhanshu Sekhar
    Ghosh, Saktiprosad
    Drew, Michael G. B.
    Mondal, Tapan Kumar
    Biswas, Sujan
    NEW JOURNAL OF CHEMISTRY, 2015, 39 (04) : 2778 - 2794
  • [49] Crystal Structure Analysis and Topological Study of Non-covalent Interactions in 2,2-Biimidazole:Salicylic Acid 2:1 Co-crystal
    Julia Bruno-Colmenarez
    Reinaldo Atencio
    Marinel Quintero
    Luis Seijas
    Rafael Almeida
    Luis Rincón
    Journal of Chemical Crystallography, 2017, 47 : 47 - 58
  • [50] Crystal Structure Analysis and Topological Study of Non-covalent Interactions in 2,2-Biimidazole:Salicylic Acid 2:1 Co-crystal
    Bruno-Colmenarez, Julia
    Atencio, Reinaldo
    Quintero, Marinel
    Seijas, Luis
    Almeida, Rafael
    Rincon, Luis
    JOURNAL OF CHEMICAL CRYSTALLOGRAPHY, 2017, 47 (1-2) : 47 - 58