A novel Co(II) complex with sulfamethoxazole ligand: Isostructuralism, non-covalent interactions, Hirshfeld surfaces, crystal voids and energy calculations

被引:0
|
作者
Di Santo, Alejandro [1 ]
Perez, Hiram [2 ]
Echeverria, Gustavo A. [3 ,4 ]
Piro, Oscar E. [3 ,4 ]
Frontera, Antonio [5 ]
Gil, Diego M. [6 ]
机构
[1] Univ Nacl Tucuman, Fac Bioquim Quim & Farm, Inst Quim Fis, San Lorenzo 456,T4000CAN, San Miguel De Tucuman, Argentina
[2] Univ La Habana, Fac Quim, Dept Quim Gen & Inorgan, Havana 10400, Cuba
[3] Univ Nacl La Plata, Dept Fis, Fac Ciencias Exactas, CC 67, RA-1900 La Plata, Argentina
[4] Consejo Nacl Invest Cient & Tecn, CT La Plata, Inst IFLP, CC 67, RA-1900 La Plata, Argentina
[5] Univ Illes Balears, Dept Quim, Crta Valldemossa Km 7-5, Palma de Mallorca 07122, Baleares, Spain
[6] Univ Nacl Tucuman, Fac Bioquim Quim & Farm, Inst Quim Organ, INBIOFAL,CONICET,UNT, Ayacucho 471,T4000INI, San Miguel De Tucuman, Argentina
关键词
Isostructurality; Intermolecular energies; Crystal voids; Hirshfeld surfaces; QTAIM; Non-covalent interactions; EXPLORING INTERMOLECULAR INTERACTIONS; SPECTROSCOPIC CHARACTERIZATION; QUANTITATIVE-ANALYSIS; MODEL ENERGIES; SULFONAMIDE; ANTIBACTERIAL; DERIVATIVES; CRYSTALEXPLORER; ANTIFUNGAL; ANTICANCER;
D O I
10.1016/j.molstruc.2024.139800
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The crystal structure of [Co(H2O)(6)][Co(SMX)(3)](2) complex (SMX = sulfamethoxazole), hereafter CoSMXW, has been solved by X-ray diffraction methods. The complex CoSMXW was characterized by Infrared (IR), Raman, and UV-Vis spectroscopies. A comparison with the analogous Mn(II) complex, [Mn(H2O)(6)][Mn(SMX)(3)](2) (CSD refcode AJIFUW), indicates 3D isostructurality and packing similarity, as evident from X-ray diffraction and geometric descriptors such as dissimilarity index (X = 2.0 from XPac) and packing similarity (PSab = 0.3070 from CrystalCMP), respectively. This represents the first case of isostructurality observed among eleven metal complexes of sulfamethoxazole reported in the literature. A study of non-covalent interactions shows presence of structural motifs involving N-(HO)-O-& mldr; and N-(HS)-S-& mldr; (Motif I), N-(HO)-O-& mldr; (Motif II), O-(HO)-O-& mldr; and O-(HN)-N-& mldr; (Motif III) H-bonds, as well as C-H-& mldr;pi contacts (Motif IV) for [Co(H2O)(6)][Co(SMX)(3)](2) and AJIFUW. Energy analysis using CrystalExplorer indicates that the strongest dimer involves Motifs I and II with total energy of -70.3 kcal/mol for CoSMXW, which is only 2.1 kcal/mol longer than that for AJIFUW. Hirshfeld surface (HS) analysis reveals meaningless effect of metal replacement on the intermolecular contacts, confirming the energetic results. The volume of the crystal voids and the percentage of free space were calculated as 862.35 & Aring;(3) and 11.8 % for CoSMXW, and 911.42 & Aring;(3) and 12.2 % for AJIFUW. 3D topology and hierarchy of interactions were analyzed with energy framework diagrams. Further, structural motifs, HS, crystal voids and intermolecular energies for the SMX free ligand (CSD refcode SLFNMB08) were also studied. Finally, the present study was complemented with DFT calculations to evaluate the strength and nature of the non-covalent interactions by using the quantum theory of atoms in molecules (QTAIM) and NCIplots computational tools. In addition, we have used the potential energy density predictor obtained from QTAIM analysis to investigate the relative contribution of each interaction to the formation of the assemblies.
引用
收藏
页数:12
相关论文
共 50 条
  • [1] Potential energy surfaces of non-covalent interactions
    Ringer, Ashley L.
    Tauer, Tony P.
    Sinnokrot, Mutasem O.
    Lively, Ryan P.
    Sherrill, C. David
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2006, 231
  • [2] Theoretical investigation of non-covalent interactions and spectroscopic properties of a new mixed-ligand Co(II) complex
    Chahkandi, Mohammad
    JOURNAL OF MOLECULAR STRUCTURE, 2016, 1111 : 193 - 200
  • [3] Non-covalent interactions in the crystal of a new macrocyclic Ag(I)-Ni(II) binuclear complex
    Li, XZ
    He, JH
    Liu, BL
    Liao, DZ
    ACTA CHIMICA SLOVENICA, 2004, 51 (02) : 343 - 351
  • [4] Bis-Citrullinato Copper(II) Complex: Synthesis, Crystal Structure, and Non-Covalent Interactions
    Ramirez-Contreras, Diego
    Garcia-Garcia, Amalia
    Sanchez-Gaytan, Brenda L.
    Serrano-de la Rosa, Laura E.
    Melendez, Francisco J.
    Choquesillo-Lazarte, Duane
    Rodriguez-Dieguez, Antonio
    Eugenia Castro, Maria
    Gonzalez-Vergara, Enrique
    CRYSTALS, 2022, 12 (10)
  • [5] Crystal Structure of 2-(Ethoxymethylene)Malononitrile, Hirshfeld Surface Analysis and DFT Evaluation of the Non-covalent Interactions Energy
    Grinev, Vyacheslav S.
    Demeshko, Ilya A.
    Sklyar, Anna E.
    Dmitriev, Maksim V.
    Yegorova, Alevtina Yu.
    JOURNAL OF CHEMICAL CRYSTALLOGRAPHY, 2024, 54 (03) : 253 - 260
  • [6] Syntheses, Crystal Structures, Non-covalent Interactions and Properties of a Nickel(II) Complex Monomer and Its Dimer
    Chu Jin-Feng
    Wang Shu-Ying
    Zhang Ming-Yu
    Xu Qi-Xin
    Wang You-Qing
    CHINESE JOURNAL OF STRUCTURAL CHEMISTRY, 2020, 39 (10) : 1877 - 1884
  • [7] Crystal structure, Hirshfeld surface analysis, crystal voids, interaction energy calculations, energy frameworks and supercapacitor applications of isatin hydrazone ligand
    Topkaya, Cansu
    Hokelek, Tuncer
    Aslan, Sema
    Ozen, Afike Ayca
    Kincal, Sultan
    Gokturk, Tolga
    Gup, Ramazan
    JOURNAL OF MOLECULAR STRUCTURE, 2024, 1316
  • [8] Deciphering non-covalent interactions in unprecedented binuclear copper complex: Spectroscopic, Hirshfeld surface and DFT investigation
    Yilmaz, Suemeyye Kirkinci
    Agar, Aysen Alaman
    Cinar, Emine Berrin
    Dege, Necmi
    Vidya, V. G.
    Kumar, V. G. Viju
    JOURNAL OF MOLECULAR STRUCTURE, 2024, 1299
  • [9] Role of non-covalent interactions in the supramolecular architectures of Co (II), Cu(II), Zn(II), and Cd (II) based complexes with heterofunctional ligand (2-amino, 5-nitrobenzoic acid): Comparative experimental and Hirshfeld surface calculations
    Jassal, Amanpreet Kaur
    INORGANICA CHIMICA ACTA, 2025, 574
  • [10] Role of hydrogen bonds and weak non-covalent interactions in the supramolecular assembly of 9-hydroxyeucaliptol: crystal structure, Hirshfeld surface analysis, and DFT calculations
    Galvez, Carolina E.
    Rocha, Mariana
    Villecco, Margarita B.
    Echeverria, Gustavo A.
    Piro, Oscar E.
    Loandos, Maria del H.
    Gil, Diego M.
    JOURNAL OF MOLECULAR MODELING, 2021, 27 (01)