Species delimitation 4.0: integrative taxonomy meets artificial intelligence☆

被引:14
|
作者
Karbstein, Kevin [1 ]
Koesters, Lara [1 ]
Hodac, Ladislav [1 ]
Hofmann, Martin [2 ]
Hoerandl, Elvira [3 ]
Tomasello, Salvatore [3 ]
Wagner, Natascha D. [3 ]
Emerson, Brent C. [4 ]
Albach, Dirk C. [5 ]
Scheu, Stefan [6 ,7 ]
Bradler, Sven [6 ]
de Vries, Jan [8 ,9 ,10 ]
Irisarri, Iker [11 ]
Li, He [12 ]
Soltis, Pamela [13 ]
Maeder, Patrick [2 ,14 ,15 ]
Waeldchen, Jana [1 ,14 ]
机构
[1] Max Planck Inst Biogeochem, Dept Biogeochem Integrat, D-07745 Jena, Germany
[2] Tech Univ Ilmenau, Inst Comp & Syst Engn, D-98693 Ilmenau, Germany
[3] Univ Gottingen, Albrecht von Haller Inst Plant Sci, Dept Systemat Biodivers & Evolut Plants Herbarium, D-37073 Gottingen, Germany
[4] Inst Nat Prod & Agrobiol IPNA CSIC, Isl Ecol & Evolut Res Grp, Tenerife 38206, Canary Islands, Spain
[5] Carl von Ossietzky Univ Oldenburg, Inst Biol & Environm Sci, D-26129 Oldenburg, Germany
[6] Univ Gottingen, Johann Friedrich Blumenbach Inst Zool & Anthropol, D-37073 Gottingen, Germany
[7] Univ Gottingen, Ctr Biodivers & Sustainable Land Use CBL, D-37073 Gottingen, Germany
[8] Univ Gottingen, Inst Microbiol & Genet, Dept Appl Bioinformat, D-37077 Gottingen, Germany
[9] Univ Gottingen, Campus Inst Data Sci CIDAS, D-37077 Gottingen, Germany
[10] Univ Gottingen, Gottingen Ctr Mol Biosci GZMB, Dept Appl Bioinformat, D-37077 Gottingen, Germany
[11] Leibniz Inst Anal Biodivers Change LIB, Museum Nat, Ctr Mol Biodivers Res, Phylogen Sect, D-20146 Hamburg, Germany
[12] Eastern China Conservat Ctr Wild Endangered Plant, Chenshan Bot Garden, Shanghai 201602, Peoples R China
[13] Univ Florida, Florida Museum Nat Hist, Gainesville, FL 32611 USA
[14] German Ctr Integrat Biodivers Res iDiv, Puschstr 4, D-04103 Leipzig, Germany
[15] Friedrich Schiller Univ Jena, Inst Ecol & Evolut, Fac Biol Sci, Philosophenweg 16, D-07743 Jena, Germany
基金
欧洲研究理事会; 中国国家自然科学基金;
关键词
GENOME EVOLUTION; CLASSIFICATION; HYBRIDIZATION; POLYPLOIDY; PHYLOGENY; INFERENCE; NETWORKS; SYSTEMS;
D O I
10.1016/j.tree.2023.11.002
中图分类号
Q14 [生态学(生物生态学)];
学科分类号
071012 ; 0713 ;
摘要
Although species are central units for biological research, recent findings in genomics are raising awareness that what we call species can be ill-founded entities due to solely morphology-based, regional species descriptions. This particularly applies to groups characterized by intricate evolutionary processes such as hybridization, polyploidy, or asexuality. Here, challenges of current integrative taxonomy (genetics/genomics + morphology + ecology, etc.) become apparent: different vored species concepts, lack of universal characters/markers, missing appropriate analytical tools for intricate evolutionary processes, and highly subjective ranking and fusion of datasets. Now, integrative taxonomy combined with artificial intelligence under a unified species concept can enable automated feature learning and data integration, and thus reduce subjectivity in species delimitation. This proach will likely accelerate revising and unraveling eukaryotic biodiversity.
引用
收藏
页码:771 / 784
页数:14
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