Systematic pan-cancer analysis identified RASSF1 as an immunological and prognostic biomarker and validated in lung cancer

被引:0
|
作者
Bai, Yibing [1 ,2 ]
Wang, Yuanyong [3 ]
Qin, Jiapei [1 ,2 ]
Wang, Ting [2 ,4 ]
Zhou, Xin [1 ,2 ]
Ma, Zhiqiang [2 ]
Wang, An [1 ,2 ]
Yang, Wenyu [2 ,4 ]
Wang, Jinliang [1 ,2 ]
Li, Jinfeng [5 ]
Hu, Yi [1 ,2 ]
机构
[1] Med Sch Chinese PLA, Beijing, Peoples R China
[2] Peoples Liberat Army Gen Hosp, Med Ctr 1, Dept Oncol, Beijing, Peoples R China
[3] Air Force Med Univ, Tangdu Hosp, Dept Thorac Surg, Xian, Peoples R China
[4] Nankai Univ, Sch Med, Tianjin, Peoples R China
[5] Peoples Liberat Army Gen Hosp, Inst Oncol, Med Ctr 5, Sr Dept Oncol, Beijing, Peoples R China
关键词
RASSF1; Pan-cancer; Prognosis; Immunity; Lung cancer; METHYLATION; IMMUNOTHERAPY;
D O I
10.1016/j.heliyon.2024.e33304
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Background: Ras association domain family member 1 (RASSF1) encodes the RASSF1A protein, serving as a scaffold protein situated at the intersection of a complex signalling network. Aims: To evaluate the immunological and prognostic significance of RASSF1 expression in various types of human cancers, with a specific focus on lung cancer. Methods: Differential expression analysis of RASSF1 was conducted based on data from The Cancer Genome Atlas, Genotype-Tissue Expression, and Cancer Cell Line Encyclopaedia databases. Prognostic analysis was performed using the Cox regression test and Kaplan-Meier test. Spearman's test was utilized for correlation analysis. Gene Ontology (GO) and Kyoto Encyclopaedia of Genes and Genomes (KEGG) gene sets were employed to enrich the associated signaling pathways. Immunohistochemical staining and quantitative real-time PCR were employed to detect protein and mRNA expression levels, respectively. Results: RASSF1 expression was significantly lower in tumour tissues than in normal tissues in most cancers, and Cox regression analysis demonstrated a significant correlation between RASSF1 expression and the prognosis of over 12 types of cancer. Specifically, high RASSF1 expression was associated with poor OS in nine cancer types, including GBMLGG (HR = 4.98, P = 1.2e-31), LGG (HR = 3.72, P = 2.5e-10), and LAML (HR = 1.48, P = 2.4e-3). Further analysis showed that RASSF1 expression was significantly correlated with immune checkpoint- and immune-related genes. Moreover, RASSF1 expression is involved in tumour microenvironment (TME), RNA modification, genomic heterogeneity, and tumour stemness. GO and KEGG analyses showed that RASSF1 was closely related to tumour immune-related pathways. Finally, RASSF1A was moderately correlated with PD-L1 (R = 0.556), and RASSF1A overexpression significantly
引用
收藏
页数:19
相关论文
共 50 条
  • [21] Systematic Pan-Cancer Analysis and Experimental Verification Identify FOXA1 as an Immunological and Prognostic Biomarker in Epithelial Ovarian Cancer
    Wang, Kai
    Guan, Chenan
    Yu, Junhui
    Chen, Xing
    Shang, Xianwen
    Mei, Shuangshuang
    Feng, Xingjun
    Zheng, Lingzhi
    DISEASE MARKERS, 2022, 2022
  • [22] Pan-cancer analysis of the prognostic and immunological role of ANLN: An onco-immunological biomarker
    Liu, Kejun
    Cui, Lei
    Li, Cunquan
    Tang, Chaofeng
    Niu, Yiming
    Hao, Ji
    Bu, Yang
    Chen, Bendong
    FRONTIERS IN GENETICS, 2022, 13
  • [23] PRKCSH serves as a potential immunological and prognostic biomarker in pan-cancer
    Qiankun Wang
    Xiong Wang
    Jiaoyuan Li
    Tongxin Yin
    Yi Wang
    Liming Cheng
    Scientific Reports, 14
  • [24] PRKCSH serves as a potential immunological and prognostic biomarker in pan-cancer
    Wang, Qiankun
    Wang, Xiong
    Li, Jiaoyuan
    Yin, Tongxin
    Wang, Yi
    Cheng, Liming
    SCIENTIFIC REPORTS, 2024, 14 (01)
  • [25] Comprehensive pan-cancer analysis of STAT3 as a prognostic and immunological biomarker
    He, Zhibo
    Song, Biao
    Zhu, Manling
    Liu, Jun
    SCIENTIFIC REPORTS, 2023, 13 (01)
  • [26] Pan-cancer analysis of ITGB3 as a potential prognostic and immunological biomarker
    Changshun Chen
    Lei Wen
    Ge Chen
    Fei Yang
    Zhong Chen
    Jianhua Ji
    Jinyi Gu
    Discover Oncology, 16 (1)
  • [27] Comprehensive pan-cancer analysis on CBX3 as a prognostic and immunological biomarker
    Niu, Hongjuan
    Chen, Peiqiong
    Fan, Lu
    Sun, Boyu
    BMC MEDICAL GENOMICS, 2022, 15 (01)
  • [28] A pan-cancer analysis of thioredoxin-interacting protein as an immunological and prognostic biomarker
    Guo, Xuxue
    Huang, Mei
    Zhang, Haonan
    Chen, Qianhui
    Hu, Ying
    Meng, Yan
    Wu, Changjie
    Tu, Chenge
    Liu, Yongfeng
    Li, Aimin
    Li, Qingyuan
    Zhou, Peirong
    Liu, Side
    CANCER CELL INTERNATIONAL, 2022, 22 (01)
  • [29] A pan-cancer analysis of thioredoxin-interacting protein as an immunological and prognostic biomarker
    Xuxue Guo
    Mei Huang
    Haonan Zhang
    Qianhui Chen
    Ying Hu
    Yan Meng
    Changjie Wu
    Chenge Tu
    Yongfeng Liu
    Aimin Li
    Qingyuan Li
    Peirong Zhou
    Side Liu
    Cancer Cell International, 22
  • [30] Pan-cancer analysis of GJB5 as a novel prognostic and immunological biomarker
    Xiaojuan Yang
    Xunjie Cao
    Qing Zhu
    Hong Wu
    Scientific Reports, 15 (1)