BooleSim: an interactive Boolean network simulator

被引:16
|
作者
Bock, Matthias [1 ]
Scharp, Till [1 ]
Talnikar, Chaitanya [2 ]
Klipp, Edda [1 ]
机构
[1] Humboldt Univ, Dept Biol, D-10115 Berlin, Germany
[2] Indian Inst Technol, Dept Chem Engn, Bombay 400076, Maharashtra, India
关键词
D O I
10.1093/bioinformatics/btt568
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
BooleSim (Boolean network simulator) is an open-source in-browser tool for simulation and manipulation of Boolean networks. It was developed mainly during Google's Summer of Code 2012 and uses the biographer project for network visualization. It can be used specifically for the modeling of gene regulatory or signal transduction networks.
引用
收藏
页码:131 / 132
页数:2
相关论文
共 50 条
  • [41] Interactive Boolean Logic Learning Using Leap Motion
    Deb, Suman
    Nama, Tutan
    2018 IEEE TENTH INTERNATIONAL CONFERENCE ON TECHNOLOGY FOR EDUCATION (T4E), 2018, : 220 - 222
  • [42] A fast and interactive heat conduction simulator on GPUs
    Wei, Zhangping
    Jang, Byunghyun
    Jia, Yafei
    JOURNAL OF COMPUTATIONAL AND APPLIED MATHEMATICS, 2014, 270 : 496 - 505
  • [43] TEACHING WITH AN INTERACTIVE REACTION-KINETICS SIMULATOR
    SHINDELL, DM
    MAGAGNOSC, C
    PURICH, DL
    JOURNAL OF CHEMICAL EDUCATION, 1978, 55 (11) : 708 - 711
  • [44] An Interactive Firewall Simulator for Information Assurance Education
    Williams, Kenneth
    Yu, Huiming
    WORLD CONGRESS ON ENGINEERING, WCE 2011, VOL I, 2011, : 510 - 513
  • [45] Reduction of Boolean network models
    Veliz-Cuba, Alan
    JOURNAL OF THEORETICAL BIOLOGY, 2011, 289 : 167 - 172
  • [46] Observability of a temporal Boolean network
    He Yun
    Li Junmi
    2014 33RD CHINESE CONTROL CONFERENCE (CCC), 2014, : 4142 - 4147
  • [47] Chaos in a simple Boolean network
    Andrecut, M
    Ali, MK
    INTERNATIONAL JOURNAL OF MODERN PHYSICS B, 2001, 15 (01): : 17 - 23
  • [48] Interactive boundary computation of Boolean combinations of sculptured solids
    Krishnan, S
    Gopi, M
    Manocha, D
    Mine, M
    COMPUTER GRAPHICS FORUM, 1997, 16 (03) : C67 - C78
  • [49] Cluster synchronization of Boolean network
    Zhang, Hao
    Wang, Xing-yuan
    COMMUNICATIONS IN NONLINEAR SCIENCE AND NUMERICAL SIMULATION, 2018, 55 : 157 - 165
  • [50] IFAS: Interactive flexible ad hoc simulator
    Ben-Asher, Yosi
    Feldman, Moran
    Feldman, Sharoni
    Gurfil, Pini
    SIMULATION MODELLING PRACTICE AND THEORY, 2007, 15 (07) : 817 - 830