A Multiscale Approach to RNA 3D Structure Prediction

被引：0
|
作者：
Liu, Liang [1 ]
Chen, Shi-Jie [1 ]
机构：
[1] Univ Missouri, Columbia, MO USA
来源：
BIOPHYSICAL JOURNAL | 2012年 / 102卷 / 03期
关键词：
D O I：
10.1016/j.bpj.2011.11.3478
中图分类号：
Q6 [生物物理学];
学科分类号：
071011 ;
摘要：
引用
收藏
页码：639A / 639A
页数：1
相关论文
共 50 条
  • [21] RNA 3D structure prediction guided by independent folding of homologous sequences
    Magnus, Marcin
    Kappel, Kalli
    Das, Rhiju
    Bujnicki, Janusz M.
    [J]. BMC BIOINFORMATICS, 2019, 20 (01)
  • [22] Contact mechanics at the nanoscale, a 3D multiscale approach
    Anciaux, Guillaume
    Molinari, Jean-Francois
    [J]. INTERNATIONAL JOURNAL FOR NUMERICAL METHODS IN ENGINEERING, 2009, 79 (09) : 1041 - 1067
  • [23] Using 3dRNA/DNA for RNA and DNA 3D Structure Prediction and Evaluation
    Xiong, Yiduo
    Zhang, Yi
    Wang, Jian
    Xiao, Yi
    [J]. CURRENT PROTOCOLS, 2023, 3 (05):
  • [24] 3dRPC: a web server for 3D RNA-protein structure prediction
    Huang, Yangyu
    Li, Haotian
    Xiao, Yi
    [J]. BIOINFORMATICS, 2018, 34 (07) : 1238 - 1240
  • [25] State-of-the-RNArt: benchmarking current methods for RNA 3D structure prediction
    Bernard, Clement
    Postic, Guillaume
    Ghannay, Sahar
    Tahi, Fariza
    [J]. NAR GENOMICS AND BIOINFORMATICS, 2024, 6 (02)
  • [26] New bioinformatics tools for RNA 2D/3D structure prediction, modeling, and analysis
    Bujnicki, J. M.
    Boniecki, M.
    Chojnowski, G.
    Walen, T.
    Rother, M.
    Puton, T.
    Piatkowski, P.
    Rother, K. M.
    [J]. FEBS JOURNAL, 2013, 280 : 543 - 543
  • [27] RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme
    Miao, Zhichao
    Adamiak, Ryszard W.
    Antczak, Maciej
    Batey, Robert T.
    Becka, Alexander J.
    Biesiada, Marcin
    Boniecki, Michat J.
    Bujnicki, Janusz M.
    Chen, Shi-Jie
    Cheng, Clarence Yu
    Chou, Fang-Chieh
    Ferre-D'Amare, Adrian R.
    Das, Rhiju
    Dawson, Wayne K.
    Ding, Feng
    Dokholyan, Nikolay V.
    Dunin-Horkawicz, Stanistaw
    Geniesse, Caleb
    Kappel, Kalli
    Kladwang, Wipapat
    Krokhotin, Andrey
    Lach, Grzegorz E.
    Major, Francois
    Mann, Thomas H.
    Magnus, Marcin
    Pachulska-Wieczorek, Katarzyna
    Patel, Dinshaw J.
    Piccirilli, Joseph A.
    Popenda, Mariusz
    Purzycka, Katarzyna J.
    Ren, Aiming
    Rice, Greggory M.
    Santalucia, John, Jr.
    Sarzynska, Joanna
    Szachniuk, Marta
    Tandon, Arpit
    Trausch, Jeremiah J.
    Tian, Siqi
    Wang, Jian
    Weeks, Kevin M.
    Williams, Benfeard, II
    Xiao, Yi
    Xu, Xiaojun
    Zhang, Dong
    Zok, Tomasz
    Westhof, Eric
    [J]. RNA, 2017, 23 (05) : 655 - 672
  • [28] RNA-MoIP: prediction of RNA secondary structure and local 3D motifs from sequence data
    Yao, Jason
    Reinharz, Vladimir
    Major, Francois
    Waldispuhl, Jerome
    [J]. NUCLEIC ACIDS RESEARCH, 2017, 45 (W1) : W440 - W444
  • [29] SimRNA: a coarse-grained method for RNA folding simulations and 3D structure prediction
    Boniecki, Michal J.
    Lach, Grzegorz
    Dawson, Wayne K.
    Tomala, Konrad
    Lukasz, Pawel
    Soltysinski, Tomasz
    Rother, Kristian M.
    Bujnicki, Janusz M.
    [J]. NUCLEIC ACIDS RESEARCH, 2016, 44 (07)
  • [30] RNA 3D Structure Prediction by Using a Coarse-Grained Model and Experimental Data
    Xia, Zhen
    Bell, David R.
    Shi, Yue
    Ren, Pengyu
    [J]. JOURNAL OF PHYSICAL CHEMISTRY B, 2013, 117 (11): : 3135 - 3144
12345