DNA barcoding using chloroplast matK and rbcL regions for the identification of bamboo species in Sabah
被引:1
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作者:
Yong, Wilson Thau Lym
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机构:
Univ Malaysia Sabah, Biotechnol Res Inst, Jalan UMS, Kota Kinabalu 88400, Sabah, MalaysiaUniv Malaysia Sabah, Biotechnol Res Inst, Jalan UMS, Kota Kinabalu 88400, Sabah, Malaysia
Yong, Wilson Thau Lym
[1
]
Mustafa, Anis Adilah
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机构:
Univ Malaysia Sabah, Biotechnol Res Inst, Jalan UMS, Kota Kinabalu 88400, Sabah, MalaysiaUniv Malaysia Sabah, Biotechnol Res Inst, Jalan UMS, Kota Kinabalu 88400, Sabah, Malaysia
Mustafa, Anis Adilah
[1
]
Derise, Mohammad Rahmat
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机构:
Univ Malaysia Sabah, Biotechnol Res Inst, Jalan UMS, Kota Kinabalu 88400, Sabah, MalaysiaUniv Malaysia Sabah, Biotechnol Res Inst, Jalan UMS, Kota Kinabalu 88400, Sabah, Malaysia
Derise, Mohammad Rahmat
[1
]
Rodrigues, Kenneth Francis
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机构:
Univ Malaysia Sabah, Biotechnol Res Inst, Jalan UMS, Kota Kinabalu 88400, Sabah, MalaysiaUniv Malaysia Sabah, Biotechnol Res Inst, Jalan UMS, Kota Kinabalu 88400, Sabah, Malaysia
Rodrigues, Kenneth Francis
[1
]
机构:
[1] Univ Malaysia Sabah, Biotechnol Res Inst, Jalan UMS, Kota Kinabalu 88400, Sabah, Malaysia
Bamboo species;
DNA barcoding;
matK;
rbcL;
Species identification;
CHALLENGES;
EVOLUTION;
INSIGHTS;
PRIMERS;
PLANTS;
D O I:
10.1016/j.bamboo.2024.100073
中图分类号:
S7 [林业];
学科分类号:
0829 ;
0907 ;
摘要:
Bamboo species play pivotal roles in maintaining ecological diversity and driving socio-economic development in Sabah, Malaysia. However, due to overlapping traits among distinct bamboo species, identifying them based solely on morphological characteristics poses challenges. DNA barcoding emerges as a highly effective method, demonstrating potential accuracy in identifying diverse plant species across various taxa and ecosystems. In this study, we used the chloroplast matK and rbcL regions as barcode markers to identify 15 bamboo plants in Sabah. Both matK and rbcL exhibited a notable 100% accuracy at the genus level, indicating their reliability in capturing broader taxonomic categories during BLAST searches and genetic distance analysis. However, at the species level, the success rate was limited to 60%, revealing challenges in differentiating closely related bamboo species using the existing DNA barcodes. Our findings underscore the need for an advanced DNA barcode reference library with extensive species coverage for accurate species identification. This study not only unveiled crucial insights into bamboo diversity and taxonomy in Sabah but also contributes to ongoing bamboo resource conservation and supports sustainable resource management in the region.
机构:
SRM Univ, Dept Genet Engn, Ctr DNA Barcoding, Kattankulathur, Tamil Nadu, IndiaSRM Univ, Dept Genet Engn, Ctr DNA Barcoding, Kattankulathur, Tamil Nadu, India
Poovitha, Sundar
Stalin, Nithaniyal
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机构:
SRM Univ, Dept Genet Engn, Ctr DNA Barcoding, Kattankulathur, Tamil Nadu, IndiaSRM Univ, Dept Genet Engn, Ctr DNA Barcoding, Kattankulathur, Tamil Nadu, India
Stalin, Nithaniyal
Balaji, Raju
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机构:
SRM Univ, Dept Genet Engn, Ctr DNA Barcoding, Kattankulathur, Tamil Nadu, IndiaSRM Univ, Dept Genet Engn, Ctr DNA Barcoding, Kattankulathur, Tamil Nadu, India
Balaji, Raju
Parani, Madasamy
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机构:
SRM Univ, Dept Genet Engn, Ctr DNA Barcoding, Kattankulathur, Tamil Nadu, IndiaSRM Univ, Dept Genet Engn, Ctr DNA Barcoding, Kattankulathur, Tamil Nadu, India
机构:
Jiangsu Univ, Biofuels Inst, Sch Environm & Safety Engn, Zhenjiang 212013, Peoples R ChinaJiangsu Univ, Biofuels Inst, Sch Environm & Safety Engn, Zhenjiang 212013, Peoples R China
Uddin, Nisar
Li, Xia
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Jiangsu Univ, Biofuels Inst, Sch Environm & Safety Engn, Zhenjiang 212013, Peoples R ChinaJiangsu Univ, Biofuels Inst, Sch Environm & Safety Engn, Zhenjiang 212013, Peoples R China
Li, Xia
Muhammad, Noor
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机构:
Hebei Agr Univ, Coll Hort, Dept Pomol, Baoding 071001, Peoples R ChinaJiangsu Univ, Biofuels Inst, Sch Environm & Safety Engn, Zhenjiang 212013, Peoples R China
Muhammad, Noor
Ullah, Riaz
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机构:
King Saud Univ, Coll Pharm, Dept Pharmacognosy, Riyadh, Saudi ArabiaJiangsu Univ, Biofuels Inst, Sch Environm & Safety Engn, Zhenjiang 212013, Peoples R China
Ullah, Riaz
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Bari, Ahmed
Khan, Khalid Ali
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机构:
King Khalid Univ, Appl Coll, Mahala Campus, Abha, Saudi Arabia
King Khalid Univ, Res Ctr Adv Mat Sci RCAMS, Unit Bee Res & Honey Prod, Abha, Saudi ArabiaJiangsu Univ, Biofuels Inst, Sch Environm & Safety Engn, Zhenjiang 212013, Peoples R China
Khan, Khalid Ali
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Ali, Niaz
Zhu, Daochen
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Jiangsu Univ, Biofuels Inst, Sch Environm & Safety Engn, Zhenjiang 212013, Peoples R ChinaJiangsu Univ, Biofuels Inst, Sch Environm & Safety Engn, Zhenjiang 212013, Peoples R China
机构:
College of Chinese Medicine Materials, Jilin Agriculture University
Institute of Chinese Materia Medica, Academy of Chinese Medical SciencesCollege of Chinese Medicine Materials, Jilin Agriculture University
LIU Miao
LI Xi-Wen
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机构:
Institute of Chinese Materia Medica, Academy of Chinese Medical SciencesCollege of Chinese Medicine Materials, Jilin Agriculture University
LI Xi-Wen
LIAO Bao-Sheng
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机构:
Institute of Chinese Materia Medica, Academy of Chinese Medical SciencesCollege of Chinese Medicine Materials, Jilin Agriculture University
LIAO Bao-Sheng
LUO Lu
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机构:
Institute of Chinese Materia Medica, Academy of Chinese Medical SciencesCollege of Chinese Medicine Materials, Jilin Agriculture University
LUO Lu
REN Yue-Ying
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机构:
College of Chinese Medicine Materials, Jilin Agriculture UniversityCollege of Chinese Medicine Materials, Jilin Agriculture University