DNA barcoding using chloroplast matK and rbcL regions for the identification of bamboo species in Sabah

被引:1
|
作者
Yong, Wilson Thau Lym [1 ]
Mustafa, Anis Adilah [1 ]
Derise, Mohammad Rahmat [1 ]
Rodrigues, Kenneth Francis [1 ]
机构
[1] Univ Malaysia Sabah, Biotechnol Res Inst, Jalan UMS, Kota Kinabalu 88400, Sabah, Malaysia
来源
关键词
Bamboo species; DNA barcoding; matK; rbcL; Species identification; CHALLENGES; EVOLUTION; INSIGHTS; PRIMERS; PLANTS;
D O I
10.1016/j.bamboo.2024.100073
中图分类号
S7 [林业];
学科分类号
0829 ; 0907 ;
摘要
Bamboo species play pivotal roles in maintaining ecological diversity and driving socio-economic development in Sabah, Malaysia. However, due to overlapping traits among distinct bamboo species, identifying them based solely on morphological characteristics poses challenges. DNA barcoding emerges as a highly effective method, demonstrating potential accuracy in identifying diverse plant species across various taxa and ecosystems. In this study, we used the chloroplast matK and rbcL regions as barcode markers to identify 15 bamboo plants in Sabah. Both matK and rbcL exhibited a notable 100% accuracy at the genus level, indicating their reliability in capturing broader taxonomic categories during BLAST searches and genetic distance analysis. However, at the species level, the success rate was limited to 60%, revealing challenges in differentiating closely related bamboo species using the existing DNA barcodes. Our findings underscore the need for an advanced DNA barcode reference library with extensive species coverage for accurate species identification. This study not only unveiled crucial insights into bamboo diversity and taxonomy in Sabah but also contributes to ongoing bamboo resource conservation and supports sustainable resource management in the region.
引用
收藏
页数:10
相关论文
共 50 条
  • [1] THE UTILITY OF RBCL AND MATK REGIONS FOR DNA BARCODING ANALYSIS OF THE GENUS SUAEDA (AMARANTHACEAE) SPECIES
    Munir, Uzma
    Perveen, Anjum
    Qamarunnisa, Syeda
    PAKISTAN JOURNAL OF BOTANY, 2015, 47 (06) : 2329 - 2334
  • [2] DNA Barcoding in Selected Species and Subspecies of Rye (Secale) Using Three Chloroplast Loci (matK, rbcL, trnH-psbA)
    Skuza, Lidia
    Szucko, Izabela
    Filip, Ewa
    Adamczyk, Anastazja
    NOTULAE BOTANICAE HORTI AGROBOTANICI CLUJ-NAPOCA, 2019, 47 (01) : 54 - 62
  • [3] DNA Barcoding: Amplification and sequence analysis of rbcl and matK genome regions in three divergent plant species
    Wattoo, Javed Iqbal
    Saleem, Muhammad Zafar
    Shahzad, Muhammad Saqib
    Arif, Amina
    Hameed, Amir
    Saleem, Mushtaq Ahmad
    ADVANCEMENTS IN LIFE SCIENCES, 2016, 4 (01): : 3 - 7
  • [4] DNA-Barcoding of Some Medicinal Plant Species in Saudi Arabia Using rbcL and matK Genes
    Alasmari, Abdulrahman
    PHYTON-INTERNATIONAL JOURNAL OF EXPERIMENTAL BOTANY, 2020, 89 (04) : 1059 - 1081
  • [5] Evaluating DNA barcoding using cpDNA matK and rbcL for species identification and phylogenetic analysis of Prunus armeniaca L. (Rosaceae) genotypes
    Emre Sevindik
    Yunus Korkom
    Zehra Tuğba Murathan
    Genetic Resources and Crop Evolution, 2024, 71 : 1825 - 1835
  • [6] Evaluating DNA barcoding using cpDNA matK and rbcL for species identification and phylogenetic analysis of Prunus armeniaca L. (Rosaceae) genotypes
    Sevindik, Emre
    Korkom, Yunus
    Murathan, Zehra Tugba
    GENETIC RESOURCES AND CROP EVOLUTION, 2024, 71 (05) : 1825 - 1835
  • [7] Phylogenetics of native conifer species in Vietnam based on two chloroplast gene regions rbcL and matK
    Mai Phuong Pham
    Viet Ha Tran
    Dinh Duy Vu
    Quoc Khanh Nguyen
    Shah, Syed Noor Muhammad
    CZECH JOURNAL OF GENETICS AND PLANT BREEDING, 2021, 57 (02) : 58 - 66
  • [8] DNA barcoding for identification of agarwood source species using trnL-trnF and matK DNA sequences
    Tanaka, Seiji
    Ito, Michiho
    JOURNAL OF NATURAL MEDICINES, 2020, 74 (01) : 42 - 50
  • [9] DNA barcoding for identification of agarwood source species using trnL-trnF and matK DNA sequences
    Seiji Tanaka
    Michiho Ito
    Journal of Natural Medicines, 2020, 74 : 42 - 50
  • [10] Universal barcoding regions, rbcL, matK and trnH-psbA do not discriminate Cinnamomum species in Sri Lanka
    Chandrasekara, C. H. W. M. R. Bhagya
    Naranpanawa, D. Nathasha U.
    Bandusekara, B. Supun
    Pushpakumara, D. K. N. G.
    Wijesundera, D. Siril A.
    Bandaranayake, Pradeepa C. G.
    PLOS ONE, 2021, 16 (02):