The recently introduced Genetic Column Generation (GenCol) algorithm has been numerically observed to efficiently and accurately compute high-dimensional optimal transport (OT) plans for general multi -marginal problems, but theoretical results on the algorithm have hitherto been lacking. The algorithm solves the OT linear program on a dynamically updated low-dimensional submanifold consisting of sparse plans. The submanifold dimension exceeds the sparse support of optimal plans only by a fixed factor beta. Here we prove that for beta >= 2 and in the two-marginal case, GenCol always converges to an exact solution, for arbitrary costs and marginals. The proof relies on the concept of c-cyclical monotonicity. As an offshoot, GenCol rigorously reduces the data complexity of numerically solving two-marginal OT problems from O(P 2 ) to O(P) without any loss in accuracy, where P is the number of discretization points for a single marginal. At the end of the paper we also present some insights into the convergence behavior in the multi -marginal case.