Hybrid algorithm of Bayesian optimization and evolutionary algorithm in crystal structure prediction

被引:4
|
作者
Yamashita, Tomoki [1 ]
Kino, Hiori [2 ]
Tsuda, Koji [2 ,3 ,4 ]
Miyake, Takashi [5 ]
Oguchi, Tamio [6 ]
机构
[1] Nagaoka Univ TechnologyTop Runner Incubat Ctr Acad, Fus, Nagaoka, Japan
[2] Natl Inst Mat Sci, Res & Serv Div Mat Data & Integrated Syst, Tsukuba, Japan
[3] Univ Tokyo, Grad Sch Frontier Sci, Kashiwa, Japan
[4] RIKEN, Ctr Adv Intelligence Project, Tokyo, Japan
[5] Natl Inst Adv Ind Sci & Technol, Res Ctr Computat Design Adv Funct Mat, Tsukuba, Japan
[6] Osaka Univ, Ctr Spintron Res Network, Toyonaka, Japan
基金
日本科学技术振兴机构;
关键词
Crystal structure prediction; Bayesian optimization; evolutionary algorithm; first-principles calculations; machine learning; materials informatics; TOTAL-ENERGY CALCULATIONS; WAVE; PSEUDOPOTENTIALS; CHEMISTRY;
D O I
10.1080/27660400.2022.2055987
中图分类号
T [工业技术];
学科分类号
08 ;
摘要
We propose a highly efficient searching algorithm in crystal structure prediction. The searching algorithm is a hybrid of the evolutionary algorithm and Bayesian optimization. The evolutionary algorithm is widely used in crystal structure prediction, and the Bayesian optimization is one of the selection-type algorithms we have developed. We have performed simulations of crystal structure prediction to compare the success rates of the random search, evolutionary algorithm, Bayesian optimization, and hybrid algorithm for up to ternary systems such as Si, Y2Co17, Al2O3, and CuGaS2, using the CrySPY code. These results demonstrate that the evolutionary algorithm can generate structures more efficiently than random structure generation, and the Bayesian optimization can efficiently select potential candidates from a large number of structures. Moreover, the hybrid algorithm, which has the advantages of both, is proved to be the most efficient searching algorithm among them.
引用
收藏
页码:67 / 74
页数:8
相关论文
共 50 条
  • [1] The XtalOpt Evolutionary Algorithm for Crystal Structure Prediction
    Falls, Zackary
    Avery, Patrick
    Wang, Xiaoyu
    Hilleke, Katerina P.
    Zurek, Eva
    [J]. JOURNAL OF PHYSICAL CHEMISTRY C, 2021, 125 (03): : 1601 - 1620
  • [2] EVO-Evolutionary algorithm for crystal structure prediction
    Bahmann, Silvia
    Kortus, Jens
    [J]. COMPUTER PHYSICS COMMUNICATIONS, 2013, 184 (06) : 1618 - 1625
  • [3] DEEPSAM: A Hybrid Evolutionary Algorithm for the Prediction of Biomolecules Structure
    Goldstein, Moshe
    [J]. HYBRID METAHEURISTICS (HM 2016), 2016, 9668 : 218 - 221
  • [4] Hybrid Optimization Algorithm for Bayesian Network Structure Learning
    Sun, Xingping
    Chen, Chang
    Wang, Lu
    Kang, Hongwei
    Shen, Yong
    Chen, Qingyi
    [J]. INFORMATION, 2019, 10 (10)
  • [5] A Bayesian Network Structure Hybrid Learning Algorithm Based on Improved Butterfly Optimization Algorithm
    Mao, Ying
    Gao, Jingpeng
    Sun, Qian
    [J]. 2022 INTERNATIONAL CONFERENCE ON MICROWAVE AND MILLIMETER WAVE TECHNOLOGY (ICMMT), 2022,
  • [6] An evolutionary algorithm for the prediction of crystal structures
    Fadda, Alessandro
    Fadda, Giuseppe
    [J]. PHYSICAL REVIEW B, 2010, 82 (10):
  • [7] A Hybrid Evolutionary Algorithm for Multiobjective Optimization
    Ahn, Chang Wook
    Kim, Hyun-Tae
    Kim, Yehoon
    An, Jinung
    [J]. 2009 FOURTH INTERNATIONAL CONFERENCE ON BIO-INSPIRED COMPUTING: THEORIES AND APPLICATIONS, PROCEEDINGS, 2009, : 19 - +
  • [8] STRUCTURE LEARNING OF BAYESIAN NETWORKS BASED ON HYBRID EVOLUTIONARY ALGORITHM WITH ELITE STRATEGY
    Shi, Jilong
    Zhu, Yungang
    [J]. JOURNAL OF NONLINEAR AND CONVEX ANALYSIS, 2021, 22 (09) : 1957 - 1970
  • [9] Evolutionary niching in the GAtor genetic algorithm for molecular crystal structure prediction
    Curtis, Farren
    Rose, Timothy
    Marom, Noa
    [J]. FARADAY DISCUSSIONS, 2018, 211 : 61 - 77
  • [10] XTALOPT: An open-source evolutionary algorithm for crystal structure prediction
    Lonie, David C.
    Zurek, Eva
    [J]. COMPUTER PHYSICS COMMUNICATIONS, 2011, 182 (02) : 372 - 387