Development of Integrated Database for Experiments and Simulations

被引:0
|
作者
Yamada, Issaku [1 ]
Kimura, Naoki [1 ]
Nomura, Takao [2 ]
Otsuguro, Satoko [2 ]
Miyachi, Hiroyuki [3 ]
Shigeta, Yasuteru [4 ]
Maenaka, Katsumi [2 ]
机构
[1] Noguchi Inst, 1-9-7 Kaga,Itabashi Ku, Tokyo 1730003, Japan
[2] Hokudaido Univ, Grad Sch Life Sci, Kita 8,Nishi 5,Kita Ku, Sapporo, Hokkaido 0600808, Japan
[3] Univ Tokyo, Grad Sch Pharmaceut Sci, Drug Discovery Initiat, 7-3-1 Hongo,Bunkyo Ku, Tokyo 1130033, Japan
[4] Univ Tsukuba, Ctr Computat Sci, 1-1-1 Tennodai, Tsukuba, Ibaraki 3058577, Japan
关键词
database; experiment; simulation; integration; chemoinformatics;
D O I
10.1248/yakushi.23-00191-2
中图分类号
R9 [药学];
学科分类号
1007 ;
摘要
Researchers collect data and use various methods to organize it. Ensuring the reliability and reproducibility of data is crucial, and collaboration across different research fields is on the rise. However, when there is geographical distance, sharing data becomes a challenging task. Therefore, there is a need for the development of a mechanism for sharing data on the web. We have developed an integrated database to facilitate the sharing and management of research data, particularly focusing on small molecules. The integrated database serves as a platform for centralizing data related to small molecules, including their chemical structures, wet lab experimental data, simulation data, and more. It has been constructed as a web application, offering features such as library management for small molecules, registration and viewing of wet lab experiment results, generation of initial conformations for simulations, and data visualization. This enables researchers to efficiently share their research data and collaborate seamlessly, whether within their research group or via cloud-based access that allows project and team members to connect from anywhere. This integrated database plays a critical role in connecting wet lab experiments and simulations, enabling researchers to cross-reference and analyze experimental data comprehensively. It serves as an essential tool to advance research and foster idea generation.
引用
收藏
页码:539 / 543
页数:5
相关论文
共 50 条
  • [31] Development of a thermodynamic database for cemented carbides for design and processing simulations
    Malin Ekroth
    Lucia F. S. Dumitrescu
    Karin Frisk
    Bo Jansson
    Metallurgical and Materials Transactions B, 2000, 31 : 615 - 619
  • [32] Development of a thermodynamic database for cemented carbides for design and processing simulations
    Ekroth, M
    Frisk, K
    Jansson, B
    Dumitrescu, LFS
    METALLURGICAL AND MATERIALS TRANSACTIONS B-PROCESS METALLURGY AND MATERIALS PROCESSING SCIENCE, 2000, 31 (04): : 615 - 619
  • [33] Development of a Searchable Database of Cryoablation Simulations for Use in Treatment Planning
    Boas, F. Edward
    Srimathveeravalli, Govindarajan
    Durack, Jeremy C.
    Kaye, Elena A.
    Erinjeri, Joseph P.
    Ziv, Etay
    Maybody, Majid
    Yarmohammadi, Hooman
    Solomon, Stephen B.
    CARDIOVASCULAR AND INTERVENTIONAL RADIOLOGY, 2017, 40 (05) : 761 - 768
  • [35] Development and Utilization of a Database of Infilled Frame Experiments for Numerical Modeling
    Huang, Honglan
    Burton, Henry, V
    Sattar, Siamak
    JOURNAL OF STRUCTURAL ENGINEERING, 2020, 146 (06)
  • [36] Integrated controlling system and unified database for high throughput protein crystallography experiments
    Gaponov, YA
    Igarashi, N
    Hiraki, M
    Sasajima, K
    Matsugaki, N
    Suzuki, M
    Kosuge, T
    Wakatsuki, S
    SYNCHROTRON RADIATION INSTRUMENTATION, 2004, 705 : 1213 - 1216
  • [37] An Integrated Database of Common Chemicals and Chemistry Demonstrations and Student Experiments Used in Hungary
    Kovacs, Lajos
    Betyar, Gabor
    Korom, Erzsebet
    JOURNAL OF CHEMICAL EDUCATION, 2021, 98 (12) : 3813 - 3823
  • [38] Development of an integrated spray and combustion model for diesel Simulations
    Kong, SC
    Rutland, CJ
    Reitz, RD
    THERMO- AND FLUID-DYNAMIC PROCESSES IN DIESEL ENGINES, 2002, : 319 - 334
  • [39] Development of model cell based on the myocardial cell experiments and simulations
    Tang, T.
    Wang, S-Q.
    Zhuang, Z.
    Experimental Mechanics in Nano and Biotechnology, Pts 1 and 2, 2006, 326-328 : 907 - 910
  • [40] Hydrodynamic simulations of integrated experiments planned for the OMEGA/OMEGA EP laser systems
    Delettrez, JA
    Myatt, J
    Radha, PB
    Stoeckl, C
    Skupsky, S
    Meyerhofer, DD
    PLASMA PHYSICS AND CONTROLLED FUSION, 2005, 47 : B791 - B798