An SoC Design for Future Mobile DNA Detection

被引：0

作者：

Dawji, Yunus ^{[1
]}

Wu, Zhongpan ^{[1
]}

Beyene, Abel ^{[1
]}

Hammad, Karim ^{[1
,2
]}

Ghafar-Zadeh, Ebrahim ^{[1
]}

Magierowski, Sebastian ^{[1
]}

机构：

[1] York Univ, Dept Elect Engn & Comp Sci, Toronto, ON M3J 1P3, Canada

[2] Arab Acad Sci Technol & Maritime Transport, Dept Elect & Commun Engn, Cairo 4471344, Egypt

来源：

IEEE EMBEDDED SYSTEMS LETTERS | 2024年 / 16卷 / 02期

基金：

加拿大自然科学与工程研究理事会;

关键词：

DNA; Bioinformatics; Sequential analysis; Hardware; Random access memory; Codes; System-on-chip; DNA sequencing; embedded computing; hardware acceleration; system-on-chip (SoC); TIME;

D O I：

10.1109/LES.2023.3321587

中图分类号：

TP3 [计算技术、计算机技术];

学科分类号：

0812 ;

摘要：

Existing miniature DNA sequencing devices hold significant promise to serve as mobile/personal genomic analysis systems in the future. But a key challenge to this vision is the absence of adequate low-power bioinformatic computing ability within the sequencing device itself. In this letter, we discuss the design and demonstrate a system-on-chip (SoC) based on an accelerated RISC-V core for such a task. The chip was fabricated in 22-nm CMOS and executes almost 10x faster than a commercial mobile processor on a DNA sequence detection task while achieving 200x better energy efficiency.

引用

页码：86 / 89

页数：4

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