MvG-NRLMF: Multi-view graph neighborhood regularized logistic matrix factorization for identifying drug-target interaction

被引:0
|
作者
Zhang, Yu [3 ]
Liao, Qian
Tiwari, Prayag
Chu, Ying [1 ]
Wang, Yu [1 ]
Ding, Yi [1 ]
Zhao, Xianyi [1 ]
Wan, Jie [4 ]
Ding, Yijie [5 ]
Han, Ke [1 ,2 ]
机构
[1] Harbin Univ Commerce, Sch Comp & Informat Engn, Harbin, Peoples R China
[2] Harbin Univ Commerce, Pharmaceut Engn Technol Res Ctr, Harbin, Peoples R China
[3] Halmstad Univ, Sch Informat Technol, Halmstad, Sweden
[4] Harbin Inst Technol, Lab Space Environm & Phys Sci, Harbin, Peoples R China
[5] Univ Elect Sci & Technol China, Yangtze Delta Reg Inst Quzhou, Quzhou, Peoples R China
基金
中国国家自然科学基金;
关键词
Laplacian matrices; Drug-target interactions; Bipartite network; Multi-view; INTERACTION PREDICTION; INFORMATION; IDENTIFICATION; INTEGRATION; KERNELS; SYSTEMS;
D O I
10.1016/j.future.2024.06.046
中图分类号
TP301 [理论、方法];
学科分类号
081202 ;
摘要
Traditional methods for predicting drug-target interactions (DTIs) have significant room for improvement in terms of time period and monetary overhead. At present, machine learning-based approaches are commonly used in the drug discovery field. In this study, a multi-view graph neighborhood regularized logical matrix factorization (MvG-NRLMF) model was proposed to predict unknown DTIs. Multiple similarity matrices (kernels) were constructed from the space of drugs and targets, the corresponding Laplacian matrices were generated, and these were fused. Finally, the MvG-NRLMF model was adjusted using an alternating gradient ascent procedure for training. On the four benchmark datasets, our method was competitive, and on some datasets, our method even outperformed existing models.
引用
收藏
页码:844 / 853
页数:10
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