SpatialCS: A tool to effectively integrate histological annotations and spatial transcriptomics analysis

被引:0
|
作者
Chu, Yanshuo
Cho, Kyung Serk
Khanduri, Isha
Zhou, Tieling
Jiang, Jiahui
Liu, Yunhe
Yan, Xinmiao
Pei, Guangsheng
Dai, Yibo
Liu, Yang
Wang, Ruiping
Jadhav, Akshaya S.
Hernandez, Sharia
Kadara, Humam
Soto, Luisa Maren Solis
Kopetz, Scott
Maru, Dipen Maheshbhai
Wang, Linghua
机构
关键词
D O I
10.1158/1538-7445.AM2024-7417
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
7417
引用
收藏
页数:2
相关论文
共 50 条
  • [21] Advances in spatial transcriptomics and related data analysis strategies
    Du, Jun
    Yang, Yu-Chen
    An, Zhi-Jie
    Zhang, Ming-Hui
    Fu, Xue-Hang
    Huang, Zou-Fang
    Yuan, Ye
    Hou, Jian
    JOURNAL OF TRANSLATIONAL MEDICINE, 2023, 21 (01)
  • [22] Advances in spatial transcriptomics and related data analysis strategies
    Jun Du
    Yu-Chen Yang
    Zhi-Jie An
    Ming-Hui Zhang
    Xue-Hang Fu
    Zou-Fang Huang
    Ye Yuan
    Jian Hou
    Journal of Translational Medicine, 21
  • [23] SPATIAL TRANSCRIPTOMICS REVEALS CELLULAR NICHES ASSOCIATED WITH HISTOLOGICAL INFLAMMATION IN POSTOPERATIVE CROHN'S DISEASE
    Battat, Robert J.
    Sangiorgi, Bruno
    Linggi, Bryan
    Gui, Sean
    Torti, Dax
    Smith, Michelle I.
    Mehandru, Saurabh
    Longman, Randy
    Lukin, Dana J.
    Scherl, Ellen J.
    Qin, Lihui
    Ma, Christopher
    Teft, Wendy
    Vande Casteele, Niels
    GASTROENTEROLOGY, 2024, 166 (05) : S1404 - S1404
  • [24] Establishment of Spatial Transcriptomics for Analysis of Tumor Microenvironment and Heterogeneity
    Nakayama, Jun
    Semba, Kentaro
    CANCER SCIENCE, 2018, 109 : 918 - 918
  • [25] INTEGRATING TRANSCRIPTOMICS WITH SPATIAL RADIOGRAPHIC ATLASES FOR GLIOMA ANALYSIS
    Li, Yonghao
    Wan, Yizhou
    Price, Stephen
    NEURO-ONCOLOGY, 2024, 26
  • [26] Bento: a toolkit for subcellular analysis of spatial transcriptomics data
    Mah, Clarence K.
    Ahmed, Noorsher
    Lopez, Nicole A.
    Lam, Dylan C.
    Pong, Avery
    Monell, Alexander
    Kern, Colin
    Han, Yuanyuan
    Prasad, Gino
    Cesnik, Anthony J.
    Lundberg, Emma
    Zhu, Quan
    Carter, Hannah
    Yeo, Gene W.
    GENOME BIOLOGY, 2024, 25 (01)
  • [27] Spatial transcriptomics reveals cellular niches associated with histological inflammation in postoperative Crohn's Disease
    Battat, R.
    Sangiorgi, B.
    Linggi, B.
    Gui, S.
    Torti, D.
    Smith, M. I.
    Mehandru, S.
    Longman, R.
    Lukin, D. J.
    Scherl, E. J.
    Qin, L.
    Ma, C.
    Teft, W.
    Casteele, N. Vande
    JOURNAL OF CROHNS & COLITIS, 2024, 18 : I135 - I136
  • [28] Emerging artificial intelligence applications in Spatial Transcriptomics analysis
    Li, Yijun
    Stanojevic, Stefan
    Garmire, Lana X.
    COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 2022, 20 : 2895 - 2908
  • [29] Integrate tool for online analysis and offline mining of people trajectories
    Calderara, S.
    Prati, A.
    Cucchiara, R.
    IET COMPUTER VISION, 2012, 6 (04) : 334 - 347
  • [30] AnnoMiner is a new web-tool to integrate epigenetics, transcription factor occupancy and transcriptomics data to predict transcriptional regulators
    Arno Meiler
    Fabio Marchiano
    Margaux Haering
    Manuela Weitkunat
    Frank Schnorrer
    Bianca H. Habermann
    Scientific Reports, 11