Combinatorial methods for barcode analysis

被引:0
|
作者
Jaramillo Rodriguez E. [1 ]
机构
[1] Department of Mathematics, University of California, Davis, One Shields Ave., Davis, 95616, CA
基金
美国国家科学基金会;
关键词
05A; 06AB; 55U; Barcodes; Persistence modules; Stirling permutations; Topological data analysis; Weak order;
D O I
10.1007/s41468-023-00143-8
中图分类号
学科分类号
摘要
A barcode is a finite multiset of closed intervals on the real line. Barcodes are important objects in topological data analysis, where they serve as summaries of the persistent homology groups of a filtration. We introduce a new combinatorial invariant associated to barcodes by mapping each barcode to a multipermutation, i.e., a permutation of some multiset, which captures the overlapping arrangement of its bars. We call the set all such multipermutations the space of combinatorial barcodes. We define an order on this space and show that the resulting poset is a graded lattice. The cover relations in this lattice can also be used to determine the set of barcode bases of persistence modules. We explore some connections between combinatorial barcodes, trapezoidal words, and Stirling permutations. Finally, we generalize this construction, producing an entire family of multipermutation invariants of barcodes. For a large class of barcodes, these multipermutations provide bounds on the Wasserstein and bottleneck distances between pairs of barcodes, thereby linking combinatorial barcodes to continuous metrics on barcodes. © The Author(s), under exclusive licence to Springer Nature Switzerland AG 2023.
引用
收藏
页码:239 / 270
页数:31
相关论文
共 50 条
  • [21] Computational analysis of mass spectrometry data using novel combinatorial methods
    Fadiel, A.
    Langston, M. A.
    Peng, X.
    Perkins, A. D.
    Taylor, H. S.
    Tuncalp, O.
    Vitello, D.
    Pevsner, P.
    Naftolin, F.
    2006 IEEE INTERNATIONAL CONFERENCE ON COMPUTER SYSTEMS AND APPLICATIONS, VOLS 1-3, 2006, : 266 - +
  • [22] Combinatorial physical methods for cellular therapy: Towards the future of cellular analysis?
    Chakrabarty, Pulasta
    Illath, Kavitha
    Kar, Srabani
    Nagai, Moeto
    Santra, Tuhin Subhra
    JOURNAL OF CONTROLLED RELEASE, 2023, 353 : 1084 - 1095
  • [23] Efficient analysis of combinatorial neural codes with algebraic, topological, and statistical methods
    Burns, Thomas
    Irwansyah, Irwansyah
    JOURNAL OF COMPUTATIONAL NEUROSCIENCE, 2023, 51 : S51 - S51
  • [24] Combinatorial Methods in Software Testing
    Kuhn, Rick
    PROCEEDINGS OF THE 2015 INTERNATIONAL CONFERENCE ON SOFT COMPUTING AND SOFTWARE ENGINEERING (SCSE'15), 2015, 62 : 9 - 10
  • [25] Topological methods in combinatorial geometry
    Karasev, R. N.
    RUSSIAN MATHEMATICAL SURVEYS, 2008, 63 (06) : 1031 - 1078
  • [26] METHODS AND APPLICATIONS OF COMBINATORIAL TECHNIQUES
    不详
    REVUE FRANCAISE D INFORMATIQUE DE RECHERCHE OPERATIONNELLE, 1967, 1 (03): : 3 - &
  • [27] Combinatorial Methods with Computer Applications
    Lev, Benjamin
    INTERFACES, 2010, 40 (03) : 246 - 247
  • [28] Combinatorial and Geometric Methods in Topology
    Petronio, Carlo
    Heard, Damian
    Pervova, Ekaterina
    MILAN JOURNAL OF MATHEMATICS, 2008, 76 (01) : 69 - 92
  • [29] Combinatorial testing: Principles and methods
    State Key Laboratory of Computer Science, Institute of Software, Chinese Acad. of Sci., Beijing 100190, China
    Ruan Jian Xue Bao, 2009, 6 (1393-1405):
  • [30] New electrocatalysts by combinatorial methods
    Smotkin, ES
    Díaz-Morales, RR
    ANNUAL REVIEW OF MATERIALS RESEARCH, 2003, 33 : 557 - 579