Advancement of Next-Generation DNA Sequencing through Ionic Blockade and Transverse Tunneling Current Methods

被引:6
|
作者
Kumawat, Rameshwar L. [1 ]
Jena, Milan Kumar [1 ]
Mittal, Sneha [1 ]
Pathak, Biswarup [1 ]
机构
[1] Indian Inst Technol IIT Indore, Dept Chem, Indore 453552, Madhya Pradesh, India
关键词
DNA sequencing; ionic current; machine learning; nanopore; transverse current; SOLID-STATE NANOPORES; SINGLE-STRANDED-DNA; ELECTRONIC TRANSPORT-PROPERTIES; ALPHA-HEMOLYSIN; GRAPHENE NANORIBBONS; HUMAN-GENOME; CURRENT SIGNALS; AL2O3; NANOPORE; NUCLEIC-ACIDS; MSPA NANOPORE;
D O I
10.1002/smll.202401112
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
DNA sequencing is transforming the field of medical diagnostics and personalized medicine development by providing a pool of genetic information. Recent advancements have propelled solid-state material-based sequencing into the forefront as a promising next-generation sequencing (NGS) technology, offering amplification-free, cost-effective, and high-throughput DNA analysis. Consequently, a comprehensive framework for diverse sequencing methodologies and a cross-sectional understanding with meticulous documentation of the latest advancements is of timely need. This review explores a broad spectrum of progress and accomplishments in the field of DNA sequencing, focusing mainly on electrical detection methods. The review delves deep into both the theoretical and experimental demonstrations of the ionic blockade and transverse tunneling current methods across a broad range of device architectures, nanopore, nanogap, nanochannel, and hybrid/heterostructures. Additionally, various aspects of each architecture are explored along with their strengths and weaknesses, scrutinizing their potential applications for ultrafast DNA sequencing. Finally, an overview of existing challenges and future directions is provided to expedite the emergence of high-precision and ultrafast DNA sequencing with ionic and transverse current approaches. This study reviews the advancements in the field of DNA sequencing, with a focus on electrical detection methods, mainly ionic blockade and transverse tunneling current approaches. It covers various biological nanopores and solid-state devices, including nanopore, nanogap, nanochannel, and hybrid/heterostructures for DNA sequencing. It also highlights strengths, weaknesses, and future directions for single-molecule DNA sequencing. image
引用
收藏
页数:43
相关论文
共 50 条
  • [41] Next-generation DNA barcoding: using next-generation sequencing to enhance and accelerate DNA barcode capture from single specimens
    Shokralla, Shadi
    Gibson, Joel F.
    Nikbakht, Hamid
    Janzen, Daniel H.
    Hallwachs, Winnie
    Hajibabaei, Mehrdad
    MOLECULAR ECOLOGY RESOURCES, 2014, 14 (05) : 892 - 901
  • [42] Current Applications and Challenges of Next-Generation Sequencing in Plasma Circulating Tumour DNA of Ovarian Cancer
    Roque, Ricardo
    Ribeiro, Ilda Patricia
    Figueiredo-Dias, Margarida
    Gourley, Charlie
    Carreira, Isabel Marques
    BIOLOGY-BASEL, 2024, 13 (02):
  • [43] Current Challenges Associated With Next-Generation Sequencing of Breast Cancer
    Sorscher, Steven
    JAMA ONCOLOGY, 2017, 3 (09) : 1283 - 1284
  • [44] Next-Generation Sequencing in Newborn Screening: A Review of Current State
    Remec, Ziga I.
    Trebusak Podkrajsek, Katarina
    Repic Lampret, Barbka
    Kovac, Jernej
    Groselj, Urh
    Tesovnik, Tine
    Battelino, Tadej
    Debeljak, Marusa
    FRONTIERS IN GENETICS, 2021, 12
  • [45] Current and future molecular profiling of cancer by next-generation sequencing
    Shibata, Tatsuhiro
    JAPANESE JOURNAL OF CLINICAL ONCOLOGY, 2015, 45 (10) : 895 - 899
  • [46] Current updates in sarcoma biomarker discovery: emphasis on next-generation sequencing-based methods
    Patton, Ashley
    Dermawan, Josephine K.
    PATHOLOGY, 2024, 56 (02) : 274 - 282
  • [47] Current Status of Next-Generation Sequencing in Bone Genetic Diseases
    Aida, Natsuko
    Saito, Akiko
    Azuma, Toshifumi
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2023, 24 (18)
  • [48] The Use of Engineered DNA as Standards in Next-generation Sequencing Assays
    Mann, P.
    McNulty, S.
    Duncavage, E.
    Huang, C.
    Anekella, B.
    Garlick, R.
    Pfeifer, J.
    JOURNAL OF MOLECULAR DIAGNOSTICS, 2018, 20 (06): : 1025 - 1025
  • [49] Next-generation DNA sequencing reveals viral diversity in biosolids
    Bibby, Kyle J.
    Viau, Emily J.
    Peccia, Jordan
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2010, 240
  • [50] Opportunities and challenges of next-generation DNA sequencing for breast units
    Pilgrim, S. M.
    Pain, S. J.
    Tischkowitz, M. D.
    BRITISH JOURNAL OF SURGERY, 2014, 101 (08) : 889 - 898