Unraveling the structural features of a contemporary 1,4-dihydropyridine derivative through crystallographic and computational study

被引:0
|
作者
Ethiraj, Jayashree [1 ,2 ]
Shankar, Bhaskaran [3 ]
Kumar, Alagarsamy Santhana Krishna [4 ,5 ]
Ranjith, Sekar [6 ]
Annamalai, Chandru [1 ]
Sundaram, Ganeshraja Ayyakannu [7 ]
Palla, Sridhar [8 ]
Vu, Khanh B. [9 ,10 ]
机构
[1] Vinayaka Missions Res Fdn, Sch Arts & Sci, Dept Phys, AVIT Campus, Chennai 603104, Tamil Nadu, India
[2] Univ Madras, CAS Crystallog & Biophys, Guindy Campus, Chennai 600025, India
[3] Thiagarajar Coll Engn, Dept Chem, Madurai 625015, Tamil Nadu, India
[4] Natl Sun Yat Sen Univ, Dept Chem, Kaohsiung 80424, Taiwan
[5] AGH Univ Sci & Technol, Fac Geol Geophys & Environm Protect, Al Mickiewicza 30, PL-30059 Krakow, Poland
[6] SRM Inst Sci & Technol, Dept Phys, Ramapuram Campus, Chennai 600089, Tamil Nadu, India
[7] Saveetha Inst Med & Tech Sci, Saveetha Dent Coll & Hosp, Dept Res Analyt, Poonamallee High Rd, Chennai 600077, Tamil Nadu, India
[8] Indian Inst Petr & Energy, Dept Chem Engn, Visakhapatnam 530003, Andhra Pradesh, India
[9] Int Univ, Dept Chem & Environm Engn, Ho Chi Minh City, Vietnam
[10] Vietnam Natl Univ, Ho Chi Minh City, Vietnam
关键词
4-dihydropyridine; Crystallography; Hirshfeld analysis; Molecular modeling; DFT; CALCIUM-CHANNEL BLOCKERS; VISUALIZATION; PYRIDINE;
D O I
10.1016/j.molstruc.2024.138057
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Crystal structure of a 1,4 dihydropyridine derivative with IUPAC name, 4-(4-hydroxy-phenyl)-2,6-dimethyl-1,4dihydro-pyridine-3,5-dicarboxylic acid bis-[(2-choloro-phyenyl)-amide] has been solved and the final refinement value converged to 0.0898 with a water molecule present in the lattice. Hirshfeld surfaces analysis shows the estimate of major relative contributions to various intermolecular contacts. The dnorm surface, shape index, curvedness and hydrogen bonding in the molecule are also reported to visualize the crystal shape, curvature and neighbor interactions. The DFT calculations were carried to address the role of the water molecule in the solved crystal structure and how the water molecule plays as a linker to hold the molecules together through hydrogen bonds with the functional groups.
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页数:8
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