SOLUTION STRUCTURE OF HIV-1 PROTEASE-ALLOPHENYLNORSTATINE DERIVATIVE INHIBITOR COMPLEX OBTAINED FROM MOLECULAR-DYNAMICS SIMULATION

被引:0
|
作者
KATO, R
TAKAHASHI, O
KISO, Y
MORIGUCHI, I
HIRONO, S
机构
[1] KITASATO UNIV, SCH PHARMACEUT SCI, MINATO KU, TOKYO, TOKYO 108, JAPAN
[2] NIKKO KYODO CO LTD, PHARMACEUT & BIOTECHNOL LAB, TODA, SAITAMA 335, JAPAN
[3] KYOTO PHARMACEUT UNIV, DEPT MED CHEM, YAMASHINA KU, KYOTO 607, JAPAN
关键词
AIDS; HIV PROTEASE INHIBITOR; ALLOPHENYLNORSTATINE; MOLECULAR DYNAMICS; SOLUTION STRUCTURE;
D O I
暂无
中图分类号
R914 [药物化学];
学科分类号
100701 ;
摘要
Structures of two enzyme-inhibitor complexes of human immunodeficiency virus-1 protease with allophenylnorstatine derivatives were obtained from molecular dynamics simulation in aqueous solution. The stronger inhibitor gave considerably smaller fluctuation at P3 site, which formed hydrogen bonding with the enzyme flap region.
引用
收藏
页码:176 / 178
页数:3
相关论文
共 50 条
  • [1] MOLECULAR-DYNAMICS SIMULATION OF HIV-1 PROTEASE IN A CRYSTALLINE ENVIRONMENT AND IN SOLUTION
    YORK, DM
    DARDEN, TA
    PEDERSEN, LG
    ANDERSON, MW
    [J]. BIOCHEMISTRY, 1993, 32 (06) : 1443 - 1453
  • [2] MOLECULAR-DYNAMICS OF HIV-1 PROTEASE
    HARTE, WE
    SWAMINATHAN, S
    BEVERIDGE, DL
    [J]. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 1992, 13 (03) : 175 - 194
  • [3] HIV-1 PROTEASE CLEAVAGE MECHANISM ELUCIDATED WITH MOLECULAR-DYNAMICS SIMULATION
    CHATFIELD, DC
    BROOKS, BR
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1995, 117 (20) : 5561 - 5572
  • [4] MOLECULAR-DYNAMICS SIMULATION OF HIV-1 PROTEASE IN A CRYSTALLINE ENVIRONMENT AND IN SOLUTION (VOL 32, PG 1443, 1993)
    YORK, DM
    DARDEN, TA
    PEDERSEN, LG
    ANDERSON, MW
    [J]. BIOCHEMISTRY, 1993, 32 (12) : 3196 - 3196
  • [5] MOLECULAR-DYNAMICS SIMULATIONS OF HIV-1 PROTEASE WITH PEPTIDE SUBSTRATE
    HARRISON, RW
    WEBER, IT
    [J]. PROTEIN ENGINEERING, 1994, 7 (11): : 1353 - 1363
  • [6] INVESTIGATION OF DOMAIN-STRUCTURE IN PROTEINS VIA MOLECULAR-DYNAMICS SIMULATION - APPLICATION TO HIV-1 PROTEASE DIMER
    SWAMINATHAN, S
    HARTE, WE
    BEVERIDGE, DL
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1991, 113 (07) : 2717 - 2721
  • [7] RATIONAL DRUG DESIGN VIA MOLECULAR-DYNAMICS SIMULATIONS OF HIV-1 PROTEASE INHIBITOR COMPLEXES
    GUBA, W
    MULLER, G
    KESSLER, H
    [J]. JOURNAL DE CHIMIE PHYSIQUE ET DE PHYSICO-CHIMIE BIOLOGIQUE, 1991, 88 (11-12) : 2551 - 2556
  • [8] Simulation of steered molecular dynamics on the exploration of the dynamic structure of HIV-1 protease
    Chen, Xin
    Chen, Xiliang
    Wu, Tao
    Wang, Qi
    [J]. MOLECULAR SIMULATION, 2012, 38 (04) : 293 - 299
  • [9] FLAP OPENING IN HIV-1 PROTEASE SIMULATED BY ACTIVATED MOLECULAR-DYNAMICS
    COLLINS, JR
    BURT, SK
    ERICKSON, JW
    [J]. NATURE STRUCTURAL BIOLOGY, 1995, 2 (04): : 334 - 338
  • [10] Molecular dynamics simulation on the complex of HIV-1 integrase and the inhibitor aurintricarboxylic acid
    Zhu, HM
    Chen, WZ
    Wang, CX
    [J]. ACTA CHIMICA SINICA, 2004, 62 (08) : 745 - 749