12 OPEN READING FRAMES REVEALED IN THE 23.6-KB SEGMENT FLANKING THE CENTROMERE ON THE SACCHAROMYCES-CEREVISIAE CHROMOSOME-XIV RIGHT ARM

被引:16
|
作者
VERHASSELT, P
AERT, R
VOET, M
VOLCKAERT, G
机构
[1] University of Leuven, Laboratory of Gene Technology, Leuven, B-3001
关键词
YEAST; CHROMOSOME XIV; CITRATE SYNTHASE; FUN34; PRP2; RPC34; SIS1; URK1;
D O I
10.1002/yea.320101013
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The nucleotide sequence of 23.6 kb of the right arm of chromosome XIV is described, starting from the centromeric region. Both strands were sequenced with an average redundancy of 4.87 per base pair. The overall G+C content is 38.8% (42.5% for putative coding regions versus 29.4% for non-coding regions). Twelve open reading frames (ORFs) greater than 100 amino acids were detected. Codon frequencies of the twelve ORFs agree with codon usage in Saccharomyces cerevisiae and all show the characteristics of low level expressed genes. Five ORFs (N2019, N2029, N2031, N2048 and N2050) are encoded by previously sequenced genes (the mitochondrial citrate synthase gene, FUN34, RPC34, PRP2 and URK1, respectively). ORF N2052 shows the characteristics of a transmembrane protein. Other elements in this region are a tRNA(Pro) gene, a tRNA(Asn) gene, a tau(34) and a truncated delta(34) element. Nucleotide sequence comparison results in relocation of the SISI gene to the left arm of the chromosome as confirmed by colinearity analysis. The nucleotide sequence data reported in this paper will appear in the EMBL, GenBank and DDBJ Nucleotide Sequence Databases under the accession number X77395.
引用
收藏
页码:1355 / 1361
页数:7
相关论文
共 50 条
  • [1] IDENTIFICATION AND CHARACTERIZATION OF THE CENTROMERE FROM CHROMOSOME-XIV IN SACCHAROMYCES-CEREVISIAE
    NEITZ, M
    CARBON, J
    MOLECULAR AND CELLULAR BIOLOGY, 1985, 5 (11) : 2887 - 2893
  • [2] Fifteen open reading frames in a 30.8 kb region of the right arm of chromosome VI from Saccharomyces cerevisiae
    Eki, T
    Naitou, M
    Hagiwara, H
    Abe, M
    Ozawa, M
    Sasanuma, SI
    Sasanuma, M
    Tsuchiya, Y
    Shibata, T
    Watanabe, K
    Ono, A
    Yamazaki, MA
    Tashiro, H
    Hanaoka, F
    Murakami, Y
    YEAST, 1996, 12 (02) : 177 - 190
  • [3] MAPPING OF THE ACC1/FAS3 GENE TO THE RIGHT ARM OF CHROMOSOME-XIV OF SACCHAROMYCES-CEREVISIAE
    GUERRA, CE
    KLEIN, HL
    YEAST, 1995, 11 (07) : 697 - 700
  • [4] Sequencing and analysis of 51 kb on the right arm of chromosome XV from Saccharomyces cerevisiae reveals 30 open reading frames
    Wiemann, S
    Rechmann, S
    Benes, V
    Voss, H
    Schwager, C
    Vlcek, C
    Stegemann, J
    Zimmermann, J
    Erfle, H
    Paces, V
    Ansorge, W
    YEAST, 1996, 12 (03) : 281 - 288
  • [5] THE SEQUENCE OF A 44,420 BP FRAGMENT LOCATED ON THE LEFT ARM OF CHROMOSOME-XIV FROM SACCHAROMYCES-CEREVISIAE
    BERGEZ, P
    DOIGNON, F
    CROUZET, M
    YEAST, 1995, 11 (10) : 967 - 974
  • [6] Sequencing of a 9.2 kb telomeric fragment from the right arm of Saccharomyces cerevisiae chromosome XIV
    Levesque, H
    Lepingle, A
    Nicaud, JM
    Gaillardin, C
    YEAST, 1996, 12 (03) : 289 - 295
  • [7] DNA SEQUENCING AND ANALYSIS OF A 24.7 KB SEGMENT ENCOMPASSING CENTROMERE-CEN11 OF SACCHAROMYCES-CEREVISIAE REVEALS 9 PREVIOUSLY UNKNOWN OPEN READING FRAMES
    DUSTERHOFT, A
    PHILIPPSEN, P
    YEAST, 1992, 8 (09) : 749 - 759
  • [8] CHROMATIN DIGESTION WITH RESTRICTION ENDONUCLEASES REVEALS 150-160 BP OF PROTECTED DNA IN THE CENTROMERE OF CHROMOSOME-XIV IN SACCHAROMYCES-CEREVISIAE
    FUNK, M
    HEGEMANN, JH
    PHILIPPSEN, P
    MOLECULAR & GENERAL GENETICS, 1989, 219 (1-2): : 153 - 160
  • [9] SEQUENCE OF A 4.8 KB FRAGMENT OF SACCHAROMYCES-CEREVISIAE CHROMOSOME-II INCLUDING 3 ESSENTIAL OPEN READING FRAMES
    BAUR, A
    SCHAAFFGERSTENSCHLAGER, I
    BOLES, E
    MIOSGA, T
    ROSE, M
    ZIMMERMANN, FK
    YEAST, 1993, 9 (03) : 289 - 293
  • [10] THE COMPLETE SEQUENCE OF A 10.8KB FRAGMENT TO THE RIGHT OF THE CHROMOSOME-III CENTROMERE OF SACCHAROMYCES-CEREVISIAE
    BITEAU, N
    FREMAUX, C
    HEBRARD, S
    MENARA, A
    AIGLE, M
    CROUZET, M
    YEAST, 1992, 8 (01) : 61 - 70