Open problems in Petri net modeling and simulation of biological systems

被引:1
|
作者
Chen, Ming [1 ]
Hofestdt, Ralf [2 ]
机构
[1] Zhejiang Univ, Coll Life Sci, Dept Bioinformat, Hangzhou 310058, Zhejiang, Peoples R China
[2] Bielefeld Univ, Fac Technol, AG Bioinformat & Med Informat, D-33501 Bielefeld, Germany
来源
IT-INFORMATION TECHNOLOGY | 2014年 / 56卷 / 02期
关键词
ACM CCS -> Computing methodologies -> Modeling and simulation; ACM CCS -> Mathematics of computing -> Discrete mathematics;
D O I
10.1515/itit-2013-1021
中图分类号
TP [自动化技术、计算机技术];
学科分类号
0812 ;
摘要
Petri net methodology has been widely used for modeling and simulation of biological systems due to its intuitive graphical representation and mathematical power for concurrent systems. In this article, some of the major problems arising in this field are addressed, ongoing progresses are discussed, and possible solutions are suggested.
引用
收藏
页码:76 / 81
页数:6
相关论文
共 50 条
  • [1] Hybrid Petri net based modeling for biological pathway simulation
    Matsuno, Hiroshi
    Nagasaki, Masao
    Miyano, Satoru
    NATURAL COMPUTING, 2011, 10 (03) : 1099 - 1120
  • [2] Hybrid Petri net based modeling for biological pathway simulation
    Hiroshi Matsuno
    Masao Nagasaki
    Satoru Miyano
    Natural Computing, 2011, 10 : 1099 - 1120
  • [3] Modeling and simulation of CONWIP systems based on petri net
    Kang, Jie
    Li, Liang
    Xinan Jiaotong Daxue Xuebao/Journal of Southwest Jiaotong University, 2009, 44 (04): : 620 - 624
  • [4] A Petri net framework for the modeling, simulation and data analysis of biological models
    Hardy, Simon
    Robillard, Pierre N.
    1ST INTERNATIONAL NORTH-AMERICAN SIMULATION TECHNOLOGY CONFERENCE, 2008, : 57 - +
  • [5] Optimized method of petri net modeling and simulation for production systems
    School of Economics and Management, Beihang University, Beijing 100083, China
    Xitong Fangzhen Xuebao, 2006, SUPPL. 2 (559-562):
  • [6] VANESA: An open-source hybrid functional Petri net modeling and simulation environment in systems biology
    Brinkrolf, Christoph
    Ochel, Lennart
    Hofestaedt, Ralf
    BIOSYSTEMS, 2021, 210
  • [7] An interactive petri net tool for modeling, analysis and simulation of complex systems
    Lima, IS
    Perkusich, A
    deFigueiredo, JCA
    INFORMATION INTELLIGENCE AND SYSTEMS, VOLS 1-4, 1996, : 870 - 875
  • [8] A simulation modeling method based on Petri net
    Huang, Yu
    Hu, Xuanzheng
    Lv, Guangxian
    Yang, Renfan
    2015 IEEE 2nd International Conference on Cyber Security and Cloud Computing (CSCloud), 2015, : 283 - 288
  • [9] A Petri Net Interpretation of Open Reconfigurable Systems
    Peschanski, Frederic
    Klaudel, Hanna
    Devillers, Raymond
    APPLICATIONS AND THEORY OF PETRI NETS, 2011, 6709 : 208 - 227
  • [10] A Petri Net Interpretation of Open Reconfigurable Systems
    Peschanski, Frederic
    Klaudel, Hanna
    Devillers, Raymond
    FUNDAMENTA INFORMATICAE, 2013, 122 (1-2) : 85 - 117