Rule-based modelling and tunable resolution

被引:9
|
作者
Harmer, Russ [1 ,2 ]
机构
[1] CNRS, PPS, Paris, France
[2] Univ Paris Diderot, Paris, France
关键词
D O I
10.4204/EPTCS.9.8
中图分类号
TP301 [理论、方法];
学科分类号
081202 ;
摘要
We investigate the use of an extension of rule-based modelling for cellular signalling to create a structured space of model variants. This enables the incremental development of rule sets that start from simple mechanisms and which, by a gradual increase in agent and rule resolution, evolve into more detailed descriptions.
引用
收藏
页码:65 / 72
页数:8
相关论文
共 50 条
  • [1] Rule-based transformations for geometric modelling
    Bellet, Thomas
    Arnould, Agnes
    Le Gall, Pascale
    [J]. ELECTRONIC PROCEEDINGS IN THEORETICAL COMPUTER SCIENCE, 2011, (48): : 20 - 37
  • [2] Rule-Based Modelling and Model Perturbation
    Danos, Vincent
    Feret, Jerome
    Fontana, Walter
    Harmer, Russ
    Krivme, Jean
    [J]. TRANSACTIONS ON COMPUTATIONAL SYSTEMS BIOLOGY XI, 2009, 5750 : 116 - +
  • [3] Rule-based modelling of cellular signalling
    Danos, Vincent
    Feret, Jerome
    Fontana, Walter
    Harmer, Russell
    Krivine, Jean
    [J]. CONCUR 2007 - CONCURRENCY THEORY, PROCEEDINGS, 2007, 4703 : 17 - 41
  • [4] A rule-based manufacturing modelling system
    Bonfatti, F
    Monari, PD
    Paganelli, P
    [J]. INTERNATIONAL JOURNAL OF COMPUTER APPLICATIONS IN TECHNOLOGY, 1997, 10 (1-2) : 1 - 14
  • [5] Rule-based modelling, symmetries, refinements
    Danos, Vincent
    Feret, Jerome
    Fontana, Walter
    Harmer, Russell
    Krivine, Jean
    [J]. FORMAL METHODS IN SYSTEMS BIOLOGY, 2008, 5054 : 103 - +
  • [6] Rule-Based Method for Entity Resolution
    Li, Lingli
    Li, Jianzhong
    Gao, Hong
    [J]. IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING, 2015, 27 (01) : 250 - 263
  • [7] A rule-based approach to the modelling of bacterial ecosystems
    Vlachosa, C
    Patona, RC
    Saunders, JR
    Wu, QH
    [J]. BIOSYSTEMS, 2006, 84 (01) : 49 - 72
  • [8] Inconsistency resolution and rule insertion for fuzzy rule-based systems
    Lee, HM
    Chen, JM
    Liu, CL
    [J]. JOURNAL OF INFORMATION SCIENCE AND ENGINEERING, 2002, 18 (02) : 187 - 210
  • [9] Rule-based modelling with the XL/GroIMP software
    Kniemeyer, O
    [J]. LOGIC OF ARTIFICIAL LIFE: ABSTRACTING AND SYNTHESIZING THE PRINCIPLES OF LIVING SYSTEMS, 2004, : 56 - 65
  • [10] Rule-based modelling of iron homeostasis in tuberculosis
    Ghosh, Soma
    Prasad, K. V. S.
    Vishveshwara, Saraswathi
    Chandra, Nagasuma
    [J]. MOLECULAR BIOSYSTEMS, 2011, 7 (10) : 2750 - 2768