Improvement in accuracy of multiple sequence alignment using novel group-to-group sequence alignment algorithm with piecewise linear gap cost

被引:0
|
作者
Shinsuke Yamada
Osamu Gotoh
Hayato Yamana
机构
[1] Waseda University,Department of Computer Science, Graduate School of Science and Engineering
[2] National Institute of Advanced Industrial Science and Technology (AIST),Computational Biology Research Center (CBRC)
[3] Kyoto University,Department of Intelligence Science and Technology, Graduate School of Informatics
来源
BMC Bioinformatics | / 7卷
关键词
Reference Alignment; Multiple Sequence Alignment Program; Sequence Alignment Algorithm; Dynamic Programming Matrix; Column Score;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [1] Improvement in accuracy of multiple sequence alignment using novel group-to-group sequence alignment algorithm with piecewise linear gap cost
    Yamada, Shinsuke
    Gotoh, Osamu
    Yamana, Hayato
    BMC BIOINFORMATICS, 2006, 7 (1)
  • [2] FURTHER IMPROVEMENT IN METHODS OF GROUP-TO-GROUP SEQUENCE ALIGNMENT WITH GENERALIZED PROFILE OPERATIONS
    GOTOH, O
    COMPUTER APPLICATIONS IN THE BIOSCIENCES, 1994, 10 (04): : 379 - 387
  • [3] A New Genetic Algorithm Using Gap Matrixes for Multiple Sequence Alignment
    Zhang, Jin
    Wang, Zhen
    ADVANCES IN INFORMATION TECHNOLOGY AND EDUCATION, PT I, 2011, 201 : 232 - +
  • [4] Performance Improvement of Genetic Algorithm for Multiple Sequence Alignment
    Amorim, Anderson Rici
    Verdadeiro Visotaky, Joao Matheus
    Contessoto, Allan de Godoi
    Neves, Leandro Alves
    Gratao de Souza, Rogeria Cristiane
    Valencio, Carlos Roberto
    Donega Zafalon, Geraldo Francisco
    Zafalon, Donega
    2016 17TH INTERNATIONAL CONFERENCE ON PARALLEL AND DISTRIBUTED COMPUTING, APPLICATIONS AND TECHNOLOGIES (PDCAT), 2016, : 69 - 72
  • [5] SEQUENCE ALIGNMENT OF CITRATE SYNTHASE PROTEINS USING A MULTIPLE SEQUENCE ALIGNMENT ALGORITHM AND MULTIPLE SCORING MATRICES
    HENNEKE, CM
    DANSON, MJ
    HOUGH, DW
    OSGUTHORPE, DJ
    PROTEIN ENGINEERING, 1989, 2 (08): : 597 - 604
  • [6] MAFFT version 5: improvement in accuracy of multiple sequence alignment
    Katoh, K
    Kuma, K
    Toh, H
    Miyata, T
    NUCLEIC ACIDS RESEARCH, 2005, 33 (02) : 511 - 518
  • [7] Improvement in speed and accuracy of multiple sequence alignment program prime
    Waseda University, Computational Biology Research Center, Japan
    不详
    不详
    IPSJ Trans. Bioinformatics, 2008, (2-12):
  • [8] GAP COSTS FOR MULTIPLE SEQUENCE ALIGNMENT
    ALTSCHUL, SF
    JOURNAL OF THEORETICAL BIOLOGY, 1989, 138 (03) : 297 - 309
  • [9] Progressive Alignment Method Using Genetic Algorithm for Multiple Sequence Alignment
    Naznin, Farhana
    Sarker, Ruhul
    Essam, Daryl
    IEEE TRANSACTIONS ON EVOLUTIONARY COMPUTATION, 2012, 16 (05) : 615 - 631
  • [10] K-group A* for multiple sequence alignment with quasi-natural gap costs
    Zhou, R
    Hansen, EA
    ICTAI 2004: 16TH IEEE INTERNATIONALCONFERENCE ON TOOLS WITH ARTIFICIAL INTELLIGENCE, PROCEEDINGS, 2004, : 688 - 695