ParticleCall: A particle filter for base calling in next-generation sequencing systems

被引:0
|
作者
Xiaohu Shen
Haris Vikalo
机构
[1] University of Texas at Austin,Department of Electrical and Computer Engineering
[2] 1 University Station C0803,undefined
来源
关键词
Hide Markov Model; Particle Filter; Hide Markov Model Model; Parameter Estimation Scheme; MCEM Algorithm;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [1] ParticleCall: A particle filter for base calling in next-generation sequencing systems
    Shen, Xiaohu
    Vikalo, Haris
    [J]. BMC BIOINFORMATICS, 2012, 13
  • [2] Base-calling for next-generation sequencing platforms
    Ledergerber, Christian
    Dessimoz, Christophe
    [J]. BRIEFINGS IN BIOINFORMATICS, 2011, 12 (05) : 489 - 497
  • [3] BASE CALLING ERROR RATES IN NEXT-GENERATION DNA SEQUENCING
    Shamaiah, Manohar
    Vikalo, Haris
    [J]. 2012 IEEE STATISTICAL SIGNAL PROCESSING WORKSHOP (SSP), 2012, : 692 - 695
  • [4] OnlineCall: fast online parameter estimation and base calling for illumina's next-generation sequencing
    Das, Shreepriya
    Vikalo, Haris
    [J]. BIOINFORMATICS, 2012, 28 (13) : 1677 - 1683
  • [5] Base-Calling Using a Random Effects Mixture Model on Next-Generation Sequencing Data
    Cacho, Ashley
    Yao, Weixin
    Cui, Xinping
    [J]. STATISTICS IN BIOSCIENCES, 2018, 10 (01) : 3 - 19
  • [6] Validation and assessment of variant calling pipelines for next-generation sequencing
    Pirooznia, Mehdi
    Kramer, Melissa
    Parla, Jennifer
    Goes, Fernando S.
    Potash, James B.
    McCombie, W. Richard
    Zandi, Peter P.
    [J]. HUMAN GENOMICS, 2014, 8 : 14
  • [7] Genotype and SNP calling from next-generation sequencing data
    Rasmus Nielsen
    Joshua S. Paul
    Anders Albrechtsen
    Yun S. Song
    [J]. Nature Reviews Genetics, 2011, 12 : 443 - 451
  • [8] Genotype and SNP calling from next-generation sequencing data
    Nielsen, Rasmus
    Paul, Joshua S.
    Albrechtsen, Anders
    Song, Yun S.
    [J]. NATURE REVIEWS GENETICS, 2011, 12 (06) : 443 - 451
  • [9] Validation and assessment of variant calling pipelines for next-generation sequencing
    Mehdi Pirooznia
    Melissa Kramer
    Jennifer Parla
    Fernando S Goes
    James B Potash
    W Richard McCombie
    Peter P Zandi
    [J]. Human Genomics, 8
  • [10] Comparison of Next-Generation Sequencing Systems
    Liu, Lin
    Li, Yinhu
    Li, Siliang
    Hu, Ni
    He, Yimin
    Pong, Ray
    Lin, Danni
    Lu, Lihua
    Law, Maggie
    [J]. JOURNAL OF BIOMEDICINE AND BIOTECHNOLOGY, 2012,