VirPool: model-based estimation of SARS-CoV-2 variant proportions in wastewater samples

被引：0
|
作者：
Askar Gafurov
Andrej Baláž
Fabian Amman
Kristína Boršová
Viktória Čabanová
Boris Klempa
Andreas Bergthaler
Tomáš Vinař
Broňa Brejová
机构：
[1] Comenius University in Bratislava,Faculty of Mathematics, Physics and Informatics
[2] Austrian Academy of Sciences,CeMM Research Center for Molecular Medicine
[3] Medical University of Vienna,Institute of Hygiene and Applied Immunology, Center for Pathophysiology, Infectiology and Immunology
[4] Slovak Academy of Sciences,Biomedical Research Center
来源：
BMC Bioinformatics | / 23卷
关键词：
SARS-CoV-2; Wastewater analysis; Variant proportion estimation; Probabilistic modeling; Weighted mixture model;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [1] VirPool: model-based estimation of SARS-CoV-2 variant proportions in wastewater samples
    Gafurov, Askar
    Balaz, Andrej
    Amman, Fabian
    Borsova, Kristina
    Cabanova, Viktoria
    Klempa, Boris
    Bergthaler, Andreas
    Vinar, Tomas
    Brejova, Brona
    BMC BIOINFORMATICS, 2022, 23 (01)
  • [2] Model-based estimation of transmissibility and reinfection of SARS-CoV-2 P.1 variant
    Renato Mendes Coutinho
    Flavia Maria Darcie Marquitti
    Leonardo Souto Ferreira
    Marcelo Eduardo Borges
    Rafael Lopes Paixão da Silva
    Otavio Canton
    Tatiana P. Portella
    Silas Poloni
    Caroline Franco
    Mateusz M. Plucinski
    Fernanda C. Lessa
    Antônio Augusto Moura da Silva
    Roberto Andre Kraenkel
    Maria Amélia de Sousa Mascena Veras
    Paulo Inácio Prado
    Communications Medicine, 1
  • [3] Model-based estimation of transmissibility and reinfection of SARS-CoV-2 P.1 variant
    Coutinho, Renato Mendes
    Darcie Marquitti, Flavia Maria
    Ferreira, Leonardo Souto
    Borges, Marcelo Eduardo
    Paixao da Silva, Rafael Lopes
    Canton, Otavio
    Portella, Tatiana P.
    Poloni, Silas
    Franco, Caroline
    Plucinski, Mateusz M.
    Lessa, Fernanda C.
    Moura da Silva, Antonio Augusto
    Kraenkel, Roberto Andre
    de Sousa Mascena Veras, Maria Amelia
    Prado, Paulo Inacio
    COMMUNICATIONS MEDICINE, 2021, 1 (01):
  • [4] Estimating the relative proportions of SARS-CoV-2 haplotypes from wastewater samples
    Pipes, Lenore
    Chen, Zihao
    Afanaseva, Svetlana
    Nielsen, Rasmus
    CELL REPORTS METHODS, 2022, 2 (10):
  • [5] A mixture model for determining SARS-Cov-2 variant composition in pooled samples
    Valieris, Renan
    Drummond, Rodrigo D.
    Defelicibus, Alexandre
    Dias-Neto, Emmanuel
    Rosales, Rafael A.
    da Silva, Israel Tojal
    BIOINFORMATICS, 2022, 38 (07) : 1809 - 1815
  • [6] Detection of SARS-CoV-2 and Omicron variant RNA in wastewater samples from Manila, Philippines
    Inson, Jessamine Gail M.
    Malla, Bikash
    Amalin, Divina M.
    Carvajal, Thaddeus M.
    Enriquez, Ma. Luisa D.
    Hirai, Soichiro
    Raya, Sunayana
    Rahmani, Aulia Fajar
    Angga, Made Sandhyana
    Sthapit, Niva
    Shrestha, Sadhana
    Ruti, Annisa Andarini
    Takeda, Tomoko
    Kitajima, Masaaki
    Alam, Zeba F.
    Haramoto, Eiji
    SCIENCE OF THE TOTAL ENVIRONMENT, 2024, 919
  • [7] Chronic shedding of a SARS-CoV-2 Alpha variant in wastewater
    Michael J. Conway
    Hannah Yang
    Lauren A. Revord
    Michael P. Novay
    Rachel J. Lee
    Avery S. Ward
    Jackson D. Abel
    Maggie R. Williams
    Rebecca L. Uzarski
    Elizabeth W. Alm
    BMC Genomics, 25
  • [8] Chronic shedding of a SARS-CoV-2 Alpha variant in wastewater
    Conway, Michael J.
    Yang, Hannah
    Revord, Lauren A.
    Novay, Michael P.
    Lee, Rachel J.
    Ward, Avery S.
    Abel, Jackson D.
    Williams, Maggie R.
    Uzarski, Rebecca L.
    Alm, Elizabeth W.
    BMC GENOMICS, 2024, 25 (01)
  • [9] Non-Parametric Model-Based Estimation of the Effective Reproduction Number for SARS-CoV-2
    Hermes, Jacques
    Rosenblatt, Marcus
    Toensing, Christian
    Timmer, Jens
    ALGORITHMS, 2023, 16 (12)
  • [10] Detection of SARS-COV-2 variants and their proportions in wastewater samples using next-generation sequencing in Finland
    Lipponen A.
    Kolehmainen A.
    Oikarinen S.
    Hokajärvi A.-M.
    Lehto K.-M.
    Heikinheimo A.
    Halkilahti J.
    Juutinen A.
    Luomala O.
    Smura T.
    Liitsola K.
    Blomqvist S.
    Savolainen-Kopra C.
    Pitkänen T.
    Scientific Reports, 14 (1) : 7751
12345