Sensitivity and correlation of hypervariable regions in 16S rRNA genes in phylogenetic analysis

被引:0
|
作者
Bo Yang
Yong Wang
Pei-Yuan Qian
机构
[1] Hong Kong University of Science and Technology,Division of Life Sciences
[2] Chinese Academy of Sciences,Sanya Institute of Deep Sea Science and Engineering
来源
关键词
16S rRNA; 16S rRNA gene; Variable regions; Phylogenetic; Geodesic distance; Primer;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [1] Sensitivity and correlation of hypervariable regions in 16S rRNA genes in phylogenetic analysis
    Yang, Bo
    Wang, Yong
    Qian, Pei-Yuan
    [J]. BMC BIOINFORMATICS, 2016, 17
  • [2] Phylogenetic Clustering of Soil Microbial Communities by 16S rRNA but Not 16S rRNA Genes
    DeAngelis, Kristen M.
    Firestone, Mary K.
    [J]. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2012, 78 (07) : 2459 - 2461
  • [3] Phylogenetic analysis of genes coding for 16S rRNA in mammalian ureaplasmas
    Harasawa, R
    Cassell, GH
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1996, 46 (03): : 827 - 829
  • [4] Amplification of 16S rRNA genes of Anaplasma species in China for phylogenetic analysis
    Liu, ZJ
    Luo, JX
    Bai, Q
    Ma, ML
    Guan, GG
    Yin, H
    [J]. VETERINARY MICROBIOLOGY, 2005, 107 (1-2) : 145 - 148
  • [5] Study of the heterogeneity of 16S rRNA genes in γ-proteobacteria:: Implications for phylogenetic analysis
    Olivier, A
    Lee, HY
    Côte, JC
    [J]. JOURNAL OF GENERAL AND APPLIED MICROBIOLOGY, 2005, 51 (06): : 395 - 405
  • [6] Phylogenetic Analysis of Cronobacter Isolates Based on the rpoA and 16S rRNA Genes
    Amy Strydom
    Michelle Cameron
    R. Corli Witthuhn
    [J]. Current Microbiology, 2012, 64 : 251 - 258
  • [7] Phylogenetic Analysis of Cronobacter Isolates Based on the rpoA and 16S rRNA Genes
    Strydom, Amy
    Cameron, Michelle
    Witthuhn, R. Corli
    [J]. CURRENT MICROBIOLOGY, 2012, 64 (03) : 251 - 258
  • [8] 16S Classifier: A Tool for Fast and Accurate Taxonomic Classification of 16S rRNA Hypervariable Regions in Metagenomic Datasets
    Chaudhary, Nikhil
    Sharma, Ashok K.
    Agarwal, Piyush
    Gupta, Ankit
    Sharma, Vineet K.
    [J]. PLOS ONE, 2015, 10 (02):
  • [9] Development of an Analysis Pipeline Characterizing Multiple Hypervariable Regions of 16S rRNA Using Mock Samples
    Barb, Jennifer J.
    Oler, Andrew J.
    Kim, Hyung-Suk
    Chalmers, Natalia
    Wallen, Gwenyth R.
    Cashion, Ann
    Munson, Peter J.
    Ames, Nancy J.
    [J]. PLOS ONE, 2016, 11 (02):
  • [10] Phylogenetic analysis of the Listeria monocytogenes based on sequencing of 16S rRNA and hlyA genes
    Dharmendra Kumar Soni
    Suresh Kumar Dubey
    [J]. Molecular Biology Reports, 2014, 41 : 8219 - 8229