RStrucFam: a web server to associate structure and cognate RNA for RNA-binding proteins from sequence information

被引:0
|
作者
Pritha Ghosh
Oommen K. Mathew
Ramanathan Sowdhamini
机构
[1] National Centre for Biological Sciences,
[2] Tata Institute of Fundamental Research,undefined
[3] SASTRA University,undefined
来源
关键词
Nuclear Magnetic Resonance Ensemble; Biomolecular Assembly; Mathematical Profile; Resubstitution Test; Structural Phylogeny;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [1] RStrucFam: a web server to associate structure and cognate RNA for RNA-binding proteins from sequence information
    Ghosh, Pritha
    Mathew, Oommen K.
    Sowdhamini, Ramanathan
    [J]. BMC BIOINFORMATICS, 2016, 17
  • [2] RBPmotif: a web server for the discovery of sequence and structure preferences of RNA-binding proteins
    Kazan, Hilal
    Morris, Quaid
    [J]. NUCLEIC ACIDS RESEARCH, 2013, 41 (W1) : W180 - W186
  • [3] RBPmap: a web server for mapping binding sites of RNA-binding proteins
    Paz, Inbal
    Kosti, Idit
    Ares, Manuel, Jr.
    Cline, Melissa
    Mandel-Gutfreund, Yael
    [J]. NUCLEIC ACIDS RESEARCH, 2014, 42 (W1) : W361 - W367
  • [4] RISP: A web-based server for prediction of RNA-binding sites in proteins
    Tong, Jing
    Jiang, Peng
    Lu, Zu-hong
    [J]. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE, 2008, 90 (02) : 148 - 153
  • [5] Nanoparticles Associate with Intrinsically Disordered RNA-Binding Proteins
    Romashchenko, Alexander V.
    Kan, Tsung-Wai
    Petrovski, Dmitry V.
    Gerlinskaya, Ludmila A.
    Moshkin, Mikhail P.
    Moshkin, Yuri M.
    [J]. ACS NANO, 2017, 11 (02) : 1328 - 1339
  • [6] Identification of RNA-binding sites in proteins by integrating various sequence information
    Wang, Cui-cui
    Fang, Yaping
    Xiao, Jiamin
    Li, Menglong
    [J]. AMINO ACIDS, 2011, 40 (01) : 239 - 248
  • [7] Identification of RNA-binding sites in proteins by integrating various sequence information
    Cui-cui Wang
    Yaping Fang
    Jiamin Xiao
    Menglong Li
    [J]. Amino Acids, 2011, 40 : 239 - 248
  • [8] RNA-binding proteins that lack canonical RNA-binding domains are rarely sequence-specific
    Ray, Debashish
    Laverty, Kaitlin U.
    Jolma, Arttu
    Nie, Kate
    Samson, Reuben
    Pour, Sara E.
    Tam, Cyrus L.
    von Krosigk, Niklas
    Nabeel-Shah, Syed
    Albu, Mihai
    Zheng, Hong
    Perron, Gabrielle
    Lee, Hyunmin
    Najafabadi, Hamed
    Blencowe, Benjamin
    Greenblatt, Jack
    Morris, Quaid
    Hughes, Timothy R.
    [J]. SCIENTIFIC REPORTS, 2023, 13 (01)
  • [9] RNA-binding proteins that lack canonical RNA-binding domains are rarely sequence-specific
    Debashish Ray
    Kaitlin U. Laverty
    Arttu Jolma
    Kate Nie
    Reuben Samson
    Sara E. Pour
    Cyrus L. Tam
    Niklas von Krosigk
    Syed Nabeel-Shah
    Mihai Albu
    Hong Zheng
    Gabrielle Perron
    Hyunmin Lee
    Hamed Najafabadi
    Benjamin Blencowe
    Jack Greenblatt
    Quaid Morris
    Timothy R. Hughes
    [J]. Scientific Reports, 13
  • [10] SSMART: sequence-structure motif identification for RNA-binding proteins
    Munteanu, Aline
    Mukherjee, Neelanjan
    Ohler, Uwe
    [J]. BIOINFORMATICS, 2018, 34 (23) : 3990 - 3998