Occupancy by key transcription factors is a more accurate predictor of enhancer activity than histone modifications or chromatin accessibility

被引：0

作者：

Nergiz Dogan

Weisheng Wu

Christapher S Morrissey

Kuan-Bei Chen

Aaron Stonestrom

Maria Long

Cheryl A Keller

Yong Cheng

Deepti Jain

Axel Visel

Len A Pennacchio

Mitchell J Weiss

Gerd A Blobel

Ross C Hardison

机构：

[1] The Pennsylvania State University,Center for Comparative Genomics and Bioinformatics, Department of Biochemistry and Molecular Biology

[2] University of Michigan,Bioinformatics Core, Department of Computational Medicine and Bioinformatics

[3] The Children’s Hospital of Philadelphia,Division of Hematology

[4] Perelman School of Medicine at the University of Pennsylvania,Department of Genetics, Mail Stop

[5] Stanford University,5120

[6] Lawrence Berkeley National Laboratory,Genomics Division

[7] DOE Joint Genome Institute,Department of Hematology

[8] St Jude Children’s Research Hospital,undefined

来源：

Epigenetics & Chromatin | / 8卷

关键词：

Functional genomics; Gene regulation; TAL1; GATA1; Histone modifications; Enhancer assay;

D O I：

暂无

中图分类号：

学科分类号：

摘要：

引用

共 17 条

[1] Occupancy by key transcription factors is a more accurate predictor of enhancer activity than histone modifications or chromatin accessibility
Dogan, Nergiz
Wu, Weisheng
Morrissey, Christapher S.
Chen, Kuan-Bei
Stonestrom, Aaron
Long, Maria
Keller, Cheryl A.
Cheng, Yong
Jain, Deepti
Visel, Axel
Pennacchio, Len A.
Weiss, Mitchell J.
Blobel, Gerd A.
Hardison, Ross C.
EPIGENETICS & CHROMATIN, 2015, 8
[2] Predicting enhancer transcription and activity from chromatin modifications
Zhu, Yun
Sun, Lin
Chen, Zhao
Whitaker, John W.
Wang, Tao
Wang, Wei
NUCLEIC ACIDS RESEARCH, 2013, 41 (22) : 10032 - 10043
[3] A Quantitative Analysis of the Impact on Chromatin Accessibility by Histone Modifications and Binding of Transcription Factors in DNase I Hypersensitive Sites
Cui, Peng
Li, Jing
Sun, Bo
Zhang, Menghuan
Lian, Baofeng
Li, Yixue
Xie, Lu
BIOMED RESEARCH INTERNATIONAL, 2013, 2013
[4] The contributions of DNA accessibility and transcription factor occupancy to enhancer activity during cellular differentiation
Long, Trevor
Bhattacharyya, Tapas
Repele, Andrea
Naylor, Madison
Nooti, Sunil
Krueger, Shawn
Manu
G3-GENES GENOMES GENETICS, 2024, 14 (02):
[5] Profiling the quantitative occupancy of myriad transcription factors across conditions by modeling chromatin accessibility data
Luo, Kaixuan
Zhong, Jianling
Safi, Alexias
Hong, Linda K.
Tewari, Alok K.
Song, Lingyun
Reddy, Timothy E.
Ma, Li
Crawford, Gregory E.
Hartemink, Alexander J.
GENOME RESEARCH, 2022, 32 (06) : 1183 - 1198
[6] Chromatin immunoprecipitation of transcription factors and histone modifications in Comma-Dβ mammary epithelial cells
Holliday, Holly
Khoury, Amanda
Swarbrick, Alexander
STAR PROTOCOLS, 2021, 2 (02):
[7] Osteogenic Commitment of Human Periodontal Ligament Cells Is Predetermined by Methylation, Chromatin Accessibility and Expression of Key Transcription Factors
Assis, Rahyza I. F.
Racca, Francesca
Ferreira, Rogerio S.
Ruiz, Karina G. S.
da Silva, Rodrigo A.
Clokie, Samuel J. H.
Wiench, Malgorzata
Andia, Denise C.
CELLS, 2022, 11 (07)
[8] Transcription-coupled recruitment of human CHD1 and CHD2 influences chromatin accessibility and histone H3 and H3.3 occupancy at active chromatin regions
Siggens, Lee
Cordeddu, Lina
Rnnerblad, Michelle
Lennartsson, Andreas
Ekwall, Karl
EPIGENETICS & CHROMATIN, 2015, 8
[9] Transcription-coupled recruitment of human CHD1 and CHD2 influences chromatin accessibility and histone H3 and H3.3 occupancy at active chromatin regions
Lee Siggens
Lina Cordeddu
Michelle Rönnerblad
Andreas Lennartsson
Karl Ekwall
Epigenetics & Chromatin, 8
[10] The Histone Methyltransferase Setd8 Alters the Chromatin Landscape and Regulates the Expression of Key Transcription Factors during Erythroid Differentiation
Lillis, Jacquelyn
Malik, Jeffrey
Couch, Tyler A.
Getman, Michael
Steiner, Laurie A.
BLOOD, 2018, 132

← 1 2 →