Tutorial: methods for three-dimensional visualization of archival tissue material

被引:0
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作者
Tariq Sami Haddad
Peter Friedl
Navid Farahani
Darren Treanor
Inti Zlobec
Iris Nagtegaal
机构
[1] Radboud University Medical Center,Department of Pathology, Radboud Institute for Molecular Life Sciences
[2] Radboud University Medical Center,Department of Cell Biology, Radboud Institute for Molecular Life Sciences
[3] The University of Texas MD Anderson Cancer Center,David H. Koch Center for Applied Research of Genitourinary Cancers, Department of Genitourinary Medical Oncology
[4] Cancer GenomiCs.nl (CGC.nl),Department of Clinical Pathology, and Department of Clinical and Experimental Medicine
[5] http://cancergenomics.nl,Institute of Pathology
[6] Strateos,undefined
[7] Menlo Park,undefined
[8] Leeds Teaching Hospitals NHS Trust,undefined
[9] University of Leeds,undefined
[10] Linkoping University,undefined
[11] Center for Medical Imaging Science and Visualization (CMIV),undefined
[12] University of Bern,undefined
来源
Nature Protocols | 2021年 / 16卷
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摘要
Analysis of three-dimensional patient specimens is gaining increasing relevance for understanding the principles of tissue structure as well as the biology and mechanisms underlying disease. New technologies are improving our ability to visualize large volume of tissues with subcellular resolution. One resource often overlooked is archival tissue maintained for decades in hospitals and research archives around the world. Accessing the wealth of information stored within these samples requires the use of appropriate methods. This tutorial introduces the range of sample preparation and microscopy approaches available for three-dimensional visualization of archival tissue. We summarize key aspects of the relevant techniques and common issues encountered when using archival tissue, including registration and antibody penetration. We also discuss analysis pipelines required to process, visualize and analyze the data and criteria to guide decision-making. The methods outlined in this tutorial provide an important and sustainable avenue for validating three-dimensional tissue organization and mechanisms of disease.
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页码:4945 / 4962
页数:17
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