Complete nucleotide sequence of a new strain of grapevine leafroll-associated virus 3 in South Africa

被引：0
|
作者：
R. Bester
H. J. Maree
J. T. Burger
机构：
[1] Stellenbosch University,Department of Genetics
[2] Agricultural Research Council,Biotechnology Platform, ARC Infruitec
来源：
Archives of Virology | 2012年 / 157卷
关键词：
Nucleotide Sequence Identity; Draft Sequence; Amino Acid Sequence Difference; NCBI Conserve Domain Database; South African Isolate;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
The complete genome sequences of two newly identified genetic variants of grapevine leafroll-associated virus 3 (GLRaV-3) are described. Two isolates, GH11 (18671 nt) and GH30 (18576 nt) were sequenced and found to be less than 70 % similar to other South African GLRaV-3 variants. The genome organization of GH11 and GH30 is similar to that of previously described GLRaV-3 isolates. However, no corresponding open reading frame 2 (ORF2) could be identified. Phylogenetic analysis indicates that GH11 and GH30 cluster in a subgroup (group VI) that is separate from the previously described GLRaV-3 isolates and should be regarded as a different strain of GLRaV-3.
引用
收藏
页码：1815 / 1819
页数：4
相关论文
共 50 条
  • [1] Complete nucleotide sequence of a new strain of grapevine leafroll-associated virus 3 in South Africa
    Bester, R.
    Maree, H. J.
    Burger, J. T.
    [J]. ARCHIVES OF VIROLOGY, 2012, 157 (09) : 1815 - 1819
  • [2] Complete nucleotide sequence of a South African isolate of grapevine leafroll-associated virus 3 reveals a 5′UTR of 737 nucleotides
    H. J. Maree
    M. -J. Freeborough
    J. T. Burger
    [J]. Archives of Virology, 2008, 153 : 755 - 757
  • [3] Complete nucleotide sequence of a South African isolate of grapevine leafroll-associated virus 3 reveals a 5′UTR of 737 nucleotides
    Maree, H. J.
    Freeborough, M. -J.
    Burger, J. T.
    [J]. ARCHIVES OF VIROLOGY, 2008, 153 (04) : 755 - 757
  • [4] Complete nucleotide sequence and genome organization of Grapevine leafroll-associated virus 3, type member of the genus Ampelovirus
    Ling, KS
    Zhu, HY
    Gonsalves, D
    [J]. JOURNAL OF GENERAL VIROLOGY, 2004, 85 : 2099 - 2102
  • [5] Grapevine leafroll-associated virus 3
    Maree, Hans J.
    Almeida, Rodrigo P. P.
    Bester, Rachelle
    Chooi, Kar Mun
    Cohen, Daniel
    Dolja, Valerian V.
    Fuchs, Marc F.
    Golino, Deborah A.
    Jooste, Anna E. C.
    Martelli, Giovanni P.
    Naidu, Rayapati A.
    Rowhani, Adib
    Saldarelli, Pasquale
    Burger, Johan T.
    [J]. FRONTIERS IN MICROBIOLOGY, 2013, 4
  • [6] Complete nucleotide sequence of a Chinese isolate of Grapevine leafroll-associated virus 3 reveals a 5′ UTR of 802 nucleotides
    Fei Fei
    Mu-Di Lyu
    Jie Li
    Zai-Feng Fan
    Yu-Qin Cheng
    [J]. Virus Genes, 2013, 46 : 182 - 185
  • [7] Complete nucleotide sequence of a Chinese isolate of Grapevine leafroll-associated virus 3 reveals a 5' UTR of 802 nucleotides
    Fei, Fei
    Lyu, Mu-Di
    Li, Jie
    Fan, Zai-Feng
    Cheng, Yu-Qin
    [J]. VIRUS GENES, 2013, 46 (01) : 182 - 185
  • [8] The complete genome sequence of the BD variant of grapevine leafroll-associated virus 2
    Bertazzon, Nadia
    Borgo, Michele
    Angelini, Elisa
    [J]. ARCHIVES OF VIROLOGY, 2010, 155 (10) : 1717 - 1719
  • [9] The complete genome sequence of the BD variant of grapevine leafroll-associated virus 2
    Nadia Bertazzon
    Michele Borgo
    Elisa Angelini
    [J]. Archives of Virology, 2010, 155 : 1717 - 1719
  • [10] Transmission ecology of Grapevine Leafroll-associated Virus 3
    Tsai, C.
    Daane, K. M.
    Bosco, D.
    Almeida, R. P.
    [J]. PHYTOPATHOLOGY, 2009, 99 (06) : S130 - S130
12345