European and multi-ancestry genome-wide association meta-analysis of atopic dermatitis highlights importance of systemic immune regulation

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作者
Ashley Budu-Aggrey
Anna Kilanowski
Maria K. Sobczyk
Suyash S. Shringarpure
Ruth Mitchell
Kadri Reis
Anu Reigo
Reedik Mägi
Mari Nelis
Nao Tanaka
Ben M. Brumpton
Laurent F. Thomas
Pol Sole-Navais
Christopher Flatley
Antonio Espuela-Ortiz
Esther Herrera-Luis
Jesus V. T. Lominchar
Jette Bork-Jensen
Ingo Marenholz
Aleix Arnau-Soler
Ayoung Jeong
Katherine A. Fawcett
Hansjorg Baurecht
Elke Rodriguez
Alexessander Couto Alves
Ashish Kumar
Patrick M. Sleiman
Xiao Chang
Carolina Medina-Gomez
Chen Hu
Cheng-jian Xu
Cancan Qi
Sarah El-Heis
Philip Titcombe
Elie Antoun
João Fadista
Carol A. Wang
Elisabeth Thiering
Baojun Wu
Sara Kress
Dilini M. Kothalawala
Latha Kadalayil
Jiasong Duan
Hongmei Zhang
Sabelo Hadebe
Thomas Hoffmann
Eric Jorgenson
Hélène Choquet
Neil Risch
Pål Njølstad
机构
[1] University of Bristol,Medical Research Council Integrative Epidemiology Unit, Bristol Medical School
[2] University of Bristol,Population Health Sciences, Bristol Medical School
[3] Helmholtz Zentrum München - German Research Center for Environmental Health,Institute of Epidemiology
[4] University of Munich Medical Center,Division of Metabolic and Nutritional Medicine, Dr. von Hauner Children’s Hospital
[5] Ludwig-Maximilians University Munich,Pettenkofer School of Public Health
[6] 23andMe,Estonian Genome Centre, Institute of Genomics
[7] Inc.,Core Facility of Genomics
[8] University of Tartu,Laboratory for Statistical and Translational Genetics
[9] University of Tartu,Department of Rheumatology, Graduate School of Medical and Dental Sciences
[10] RIKEN Center for Integrative Medical Sciences,K.G. Jebsen Center for Genetic Epidemiology, Department of Public Health and Nursing, NTNU
[11] Tokyo Medical and Dental University (TMDU),HUNT Research Centre, Department of Public Health and Nursing, NTNU
[12] Norwegian University of Science and Technology,Clinic of Medicine, St. Olavs Hospital
[13] Norwegian University of Science and Technology,Department of Clinical and Molecular Medicine
[14] Trondheim University Hospital,BioCore
[15] NTNU Norwegian University of Science and Technology, Bioinformatics Core Facility, NTNU
[16] Norwegian University of Science and Technology,Clinic of Laboratory Medicine, St. Olavs Hospital
[17] Trondheim University Hospital,Department of Obstetrics and Gynecology, Institute of Clinical Sciences, Sahlgrenska Academy
[18] University of Gothenburg,Genomics and Health Group, Department of Biochemistry, Microbiology, Cell Biology and Genetics
[19] Universidad de La Laguna,Novo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health and Medical Sciences
[20] University of Copenhagen,Clinic for Pediatric Allergy, Experimental and Clinical Research Center
[21] Max-Delbrück-Center for Molecular Medicine,Department of Health Sciences
[22] Charité-Universitätsmedizin Berlin,Department of Epidemiology and Preventive Medicine
[23] Swiss Tropical and Public Health Institute,Department of Dermatology and Allergy
[24] University of Basel,School of Biosciences and Medicine
[25] University of Leicester,Department of Clinical Science and Education Södersjukhuset
[26] University of Regensburg,Center for Applied Genomics
[27] University Hospital Schleswig-Holstein,Department of Genetics, Perelman School of Medicine
[28] University of Surrey,The Generation R Study Group, Erasmus MC
[29] Karolinska Institutet,Department of Internal Medicine, Erasmus MC
[30] Children’s Hospital of Philadelphia,Department of Dermatology, Erasmus MC
[31] University of Pennsylvania,Centre for Individualized Infection Medicine
[32] Rhythm Pharmaceuticals,TWINCORE
[33] University Medical Center Rotterdam,MRC Lifecourse Epidemiology Centre
[34] University Medical Center Rotterdam,Faculty of Medicine
[35] University Medical Center Rotterdam,Institute of Developmental Sciences
[36] University of Groningen,Department of Epidemiology Research
[37] University Medical Center Groningen,Department of Clinical Sciences
[38] Department of Pediatric Pulmonology and Pediatric Allergy,Institute for Molecular Medicine Finland (FIMM)
[39] Beatrix Children’s Hospital,School of Medicine and Public Health
[40] University of Groningen,Center for Individualized and Genomic Medicine Research (CIGMA), Department of Medicine
[41] University Medical Center Groningen,Environmental Epidemiology of Lung
[42] GRIAC Research Institute,Human Development and Health, Faculty of Medicine
[43] CiiM,NIHR Southampton Biomedical Research Centre
[44] a joint venture between Hannover Medical School and the Helmholtz Centre for Infection Research,Division of Epidemiology, Biostatistics, and Environmental Health, School of Public Health
[45] Centre for Experimental and Clinical Infection Research,Division of Immunology, Department of Pathology, Faculty of Health Sciences
[46] a joint venture between the Hannover Medical School and the Helmholtz Centre for Infection Research,Department of Epidemiology and Biostatistics
[47] University of Southampton,Division of Research
[48] University of Southampton,Center for Diabetes Research, Department of Clinical Science
[49] University of Southampton,Children and Youth Clinic
[50] Department of Bioinformatics & Data Mining,NORMENT Centre, Institute of Clinical Medicine
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摘要
Atopic dermatitis (AD) is a common inflammatory skin condition and prior genome-wide association studies (GWAS) have identified 71 associated loci. In the current study we conducted the largest AD GWAS to date (discovery N = 1,086,394, replication N = 3,604,027), combining previously reported cohorts with additional available data. We identified 81 loci (29 novel) in the European-only analysis (which all replicated in a separate European analysis) and 10 additional loci in the multi-ancestry analysis (3 novel). Eight variants from the multi-ancestry analysis replicated in at least one of the populations tested (European, Latino or African), while two may be specific to individuals of Japanese ancestry. AD loci showed enrichment for DNAse I hypersensitivity and eQTL associations in blood. At each locus we prioritised candidate genes by integrating multi-omic data. The implicated genes are predominantly in immune pathways of relevance to atopic inflammation and some offer drug repurposing opportunities.
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