The past, present and future of genome-wide re-annotation

被引:0
|
作者
Christos A Ouzounis
Peter D Karp
机构
[1] The European Bioinformatics Institute,Computational Genomics Group
[2] EMBL Cambridge Outstation,Bioinformatics Research Group
[3] AI Center,undefined
[4] SRI International,undefined
来源
Genome Biology | / 3卷 / 2期
关键词
Genome Annotation; Chlamydia Trachomatis; Function Prediction; Mycoplasma Pneumoniae; Archaeal Species;
D O I
10.1186/gb-2002-3-2-comment2001
中图分类号
学科分类号
摘要
Annotation, the process by which structural or functional information is inferred for genes or proteins, is crucial for obtaining value from genome sequences. We define the process of annotating a previously annotated genome sequence as 're-annotation', and examine the strengths and weaknesses of current manual and automatic genome-wide re-annotation approaches.
引用
收藏
相关论文
共 50 条
  • [1] The past, present and future of genome-wide re-annotation
    Ouzounis, Christos A.
    Karp, Peter D.
    [J]. GENOME BIOLOGY, 2002, 3 (02):
  • [2] Genome-wide association studies: past, present and future
    McCarthy, Mark I.
    Hirschhorn, Joel N.
    [J]. HUMAN MOLECULAR GENETICS, 2008, 17 : R100 - R101
  • [3] Genome re-annotation: a wiki solution?
    Steven L Salzberg
    [J]. Genome Biology, 8
  • [4] Genome re-annotation: a wiki solution?
    Salzberg, Steven L.
    [J]. GENOME BIOLOGY, 2007, 8 (01)
  • [5] A re-annotation of the Saccharomyces cerevisiae genome
    Wood, V
    Rutherford, KM
    Ivens, A
    Rajandream, MA
    Barrell, B
    [J]. COMPARATIVE AND FUNCTIONAL GENOMICS, 2001, 2 (03): : 143 - 154
  • [6] Genome-wide association studies of atrial fibrillation: past, present, and future
    Sinner, Moritz F.
    Ellinor, Patrick T.
    Meitinger, Thomas
    Benjamin, Emelia J.
    Kaeaeb, Stefan
    [J]. CARDIOVASCULAR RESEARCH, 2011, 89 (04) : 701 - 709
  • [7] Genome-wide association studies in Crohn's disease: Past, present and future
    Verstockt, Bram
    Smith, Kenneth G. C.
    Lee, James C.
    [J]. CLINICAL & TRANSLATIONAL IMMUNOLOGY, 2018, 7 (01):
  • [8] Re-annotation of the woodland strawberry (Fragaria vesca) genome
    Omar Darwish
    Rachel Shahan
    Zhongchi Liu
    Janet P Slovin
    Nadim W Alkharouf
    [J]. BMC Genomics, 16
  • [9] Re-annotation of the woodland strawberry (Fragaria vesca) genome
    Darwish, Omar
    Shahan, Rachel
    Liu, Zhongchi
    Slovin, Janet P.
    Alkharouf, Nadim W.
    [J]. BMC GENOMICS, 2015, 16
  • [10] Genome Re-Annotation and Transcriptome Analyses of Sanghuangporus sanghuang
    Shen, Zi-Qi
    Jiang, Ji-Hang
    Li, Chang-Tian
    Li, Yu
    Zhou, Li-Wei
    [J]. JOURNAL OF FUNGI, 2023, 9 (05)