Reference-guided de novo assembly approach improves genome reconstruction for related species

被引：0
|
作者：
Heidi E. L. Lischer
Kentaro K. Shimizu
机构：
[1] University of Zurich,Department of Evolutionary Biology and Environmental Studies (IEU)
[2] Swiss Institute of Bioinformatics (SIB),Kihara Institute for Biological Research
[3] Yokohama City University,undefined
来源：
BMC Bioinformatics | / 18卷
关键词：
Genome assembly; Reference-guided; De novo; Related species; Assembly evaluation;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [1] Reference-guided &ITde novo&IT assembly approach improves genome reconstruction for related species
    Lischer, Heidi E. L.
    Shimizu, Kentaro K.
    BMC BIOINFORMATICS, 2017, 18
  • [2] The effect of reference species on reference-guided genome assembly
    Kim, Juyeon
    Lee, Daehwan
    Sim, Mikang
    Lee, Jongin
    Kim, Jaebum
    PROCEEDINGS OF THE EIGHTH INTERNATIONAL CONFERENCE ON COMPUTATIONAL SYSTEMS-BIOLOGY AND BIOINFORMATICS (CSBIO 2017), 2017, : 23 - 27
  • [3] Reference-Guided De Novo Genome Assembly of the Flour Beetle Tribolium freemani
    Volaric, Marin
    Despot-Slade, Evelin
    Veseljak, Damira
    Mestrovic, Nevenka
    Mravinac, Brankica
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2022, 23 (11)
  • [4] A hybrid reference-guided de novo assembly approach for generating Cyclospora mitochondrion genomes
    Gopinath, G. R.
    Cinar, H. N.
    Murphy, H. R.
    Durigan, M.
    Almeria, M.
    Tall, B. D.
    DaSilva, A. J.
    GUT PATHOGENS, 2018, 10
  • [5] A hybrid reference-guided de novo assembly approach for generating Cyclospora mitochondrion genomes
    G. R. Gopinath
    H. N. Cinar
    H. R. Murphy
    M. Durigan
    M. Almeria
    B. D. Tall
    A. J. DaSilva
    Gut Pathogens, 10
  • [6] Combining de novo and reference-guided assembly with scaffold_builder
    Silva, Genivaldo G. Z.
    Dutilh, Bas E.
    Matthews, T. David
    Elkins, Keri
    Schmieder, Robert
    Dinsdale, Elizabeth A.
    Edwards, Robert A.
    SOURCE CODE FOR BIOLOGY AND MEDICINE, 2013, 8 (01):
  • [7] Reference-Guided De Novo Genome Assembly to Dissect a QTL Region for Submergence Tolerance Derived from Ciherang-Sub1
    Liang, Yuya
    Wang, Shichen
    Harper, Chersty L.
    Subramanian, Nithya K.
    Tabien, Rodante E.
    Johnson, Charles D.
    Bailey-Serres, Julia
    Septiningsih, Endang M.
    PLANTS-BASEL, 2021, 10 (12):
  • [8] A consistency-based consensus algorithm for de novo and reference-guided sequence assembly of short reads
    Rausch, Tobias
    Koren, Sergey
    Denisov, Gennady
    Weese, David
    Emde, Anne-Katrin
    Doering, Andreas
    Reinert, Knut
    BIOINFORMATICS, 2009, 25 (09) : 1118 - 1124
  • [9] The Utilization of Reference-Guided Assembly and In Silico Libraries Improves the Draft Genome of Clarias batrachus and Culter alburnus
    Kai Liu
    Nan Xie
    Yuxi Wang
    Xinyi Liu
    Marine Biotechnology, 2023, 25 (6) : 907 - 917
  • [10] Two Low Coverage Bird Genomes and a Comparison of Reference-Guided versus De Novo Genome Assemblies
    Card, Daren C.
    Schield, Drew R.
    Reyes-Velasco, Jacobo
    Fujita, Matthew K.
    Andrew, Audra L.
    Oyler-McCance, Sara J.
    Fike, Jennifer A.
    Tomback, Diana F.
    Ruggiero, Robert P.
    Castoe, Todd A.
    PLOS ONE, 2014, 9 (09):
12345