Single-step SNP-BLUP with on-the-fly imputed genotypes and residual polygenic effects

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作者：
Matti Taskinen
Esa A. Mäntysaari
Ismo Strandén
机构：
[1] Natural Resources Institute Finland (Luke),
来源：
Genetics Selection Evolution | / 49卷
关键词：
Relationship Matrix; Sparse Matrice; Well Linear Unbiased Prediction; Impute Genotype; Genomic Well Linear Unbiased Prediction;
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    [J]. GENETICS SELECTION EVOLUTION, 2017, 49
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  • [3] Heterogeneity in convergence behaviour of the single-step SNP-BLUP model across different effects and animal groups
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    [J]. Genetics Selection Evolution, 55
  • [4] Using Monte Carlo method to include polygenic effects in calculation of SNP-BLUP model reliability
    Ben Zaabza, H.
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    Stranden, I
    [J]. JOURNAL OF DAIRY SCIENCE, 2020, 103 (06) : 5170 - 5182
  • [5] Alternative SNP weighting for multi-step and single-step genomic BLUP in the presence of causative variants
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    Hay, El Hamidi A.
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    [J]. JOURNAL OF ANIMAL BREEDING AND GENETICS, 2023, 140 (06) : 679 - 694
  • [6] Alternative SNP weighting for multi-step and single-step genomic BLUP in the presence of causative variants
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    Fragomeni, Breno O.
    [J]. JOURNAL OF ANIMAL SCIENCE, 2021, 99 : 228 - 228
  • [7] Different methods to calculate genomic predictions-Comparisons of BLUP at the single nucleotide polymorphism level (SNP-BLUP), BLUP at the individual level (G-BLUP), and the one-step approach (H-BLUP)
    Koivula, M.
    Stranden, I.
    Su, G.
    Mantysaari, E. A.
    [J]. JOURNAL OF DAIRY SCIENCE, 2012, 95 (07) : 4065 - 4073
  • [8] Genomic prediction with single-step genomic BLUP using a subset of genotypes in US Holstein.
    Masuda, Y.
    Tsuruta, S.
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    [J]. JOURNAL OF DAIRY SCIENCE, 2020, 103 : 141 - 141
  • [9] Validation of single-step genomic BLUP random regression test-day models and SNP effects analysis on milk yield in French Saanen goats
    Arnal, M.
    Robert-Granie, C.
    Ducrocq, V.
    Larroque, H.
    [J]. JOURNAL OF DAIRY SCIENCE, 2023, 106 (07) : 4813 - 4824
  • [10] Hot topic: Use of genomic recursions in single-step genomic best linear unbiased predictor (BLUP) with a large number of genotypes
    Fragomeni, B. O.
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    Tsuruta, S.
    Masuda, Y.
    Aguilar, I.
    Legarra, A.
    Lawlor, T. J.
    Misztal, I.
    [J]. JOURNAL OF DAIRY SCIENCE, 2015, 98 (06) : 4090 - 4094
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