The cis-regulatory dynamics of embryonic development at single-cell resolution

被引:0
|
作者
Darren A. Cusanovich
James P. Reddington
David A. Garfield
Riza M. Daza
Delasa Aghamirzaie
Raquel Marco-Ferreres
Hannah A. Pliner
Lena Christiansen
Xiaojie Qiu
Frank J. Steemers
Cole Trapnell
Jay Shendure
Eileen E. M. Furlong
机构
[1] University of Washington,Department of Genome Sciences
[2] European Molecular Biology Laboratory (EMBL),undefined
[3] Genome Biology Unit,undefined
[4] Illumina,undefined
[5] San Diego,undefined
[6] Howard Hughes Medical Institute,undefined
[7] IRI Life Sciences,undefined
[8] Humboldt Universität zu Berlin,undefined
来源
Nature | 2018年 / 555卷
关键词
D O I
暂无
中图分类号
学科分类号
摘要
An improved assay for chromatin accessibility at single-cell resolution in Drosophila melanogaster embryos enables identification of developmental-stage- and cell-lineage-specific patterns of chromatin-level transcriptional regulation.
引用
收藏
页码:538 / 542
页数:4
相关论文
共 50 条
  • [1] The cis-regulatory dynamics of embryonic development at single-cell resolution
    Cusanovich, Darren A.
    Reddington, James P.
    Garfield, David A.
    Daza, Riza M.
    Aghamirzaie, Delasa
    Marco-Ferreres, Raquel
    Pliner, Hannah A.
    Christiansen, Lena
    Qiu, Xiaojie
    Steemers, Frank J.
    Trapnell, Cole
    Shendure, Jay
    Furlong, Eileen E. M.
    NATURE, 2018, 555 (7697) : 538 - +
  • [2] A cis-regulatory atlas in maize at single-cell resolution
    Marand, Alexandre P.
    Chen, Zongliang
    Gallavotti, Andrea
    Schmitz, Robert J.
    CELL, 2021, 184 (11) : 3041 - +
  • [3] Single-cell analysis of cis-regulatory elements
    Marand, Alexandre P.
    Schmitz, Robert J.
    CURRENT OPINION IN PLANT BIOLOGY, 2022, 65
  • [4] Characterizing cis-regulatory elements using single-cell epigenomics
    Preissl, Sebastian
    Gaulton, Kyle J.
    Ren, Bing
    NATURE REVIEWS GENETICS, 2023, 24 (01) : 21 - 43
  • [5] Characterizing cis-regulatory elements using single-cell epigenomics
    Sebastian Preissl
    Kyle J. Gaulton
    Bing Ren
    Nature Reviews Genetics, 2023, 24 : 21 - 43
  • [6] Plant Cis-regulatory Elements at Single Cell Resolution.
    Schmitz, Bob
    Marand, Alex
    Zhang, Xuan
    Yan, Haidong
    Mendieta, Pablo
    Bang, Sohyun
    Gallavotti, Andrea
    Chen, Zongliang
    IN VITRO CELLULAR & DEVELOPMENTAL BIOLOGY-ANIMAL, 2021, 57 (SUPPL 1) : S24 - S24
  • [7] Quantification and visualization of cis-regulatory dynamics in single-cell multi-omics data with TREASMO
    Liu, Chaozhong
    Wang, Linhua
    Liu, Zhandong
    NAR GENOMICS AND BIOINFORMATICS, 2024, 6 (01)
  • [8] Detection of gene cis-regulatory element perturbations in single-cell transcriptomes
    Yeo, Grace Hui Ting
    Juez, Oscar
    Chen, Qing
    Banerjee, Budhaditya
    Chu, Lendy
    Shen, Max W.
    Sabry, May
    Logister, Ive
    Sherwood, Richard I.
    Gifford, David K.
    PLOS COMPUTATIONAL BIOLOGY, 2021, 17 (03)
  • [9] Conserved Cis-Regulatory Modules Control Robustness in Msx1 Expression at Single-Cell Resolution
    Vance, Keith W.
    Woodcock, Dan J.
    Reid, John E.
    Bretschneider, Till
    Ott, Sascha
    Koentges, Georgy
    GENOME BIOLOGY AND EVOLUTION, 2015, 7 (09): : 2762 - 2778
  • [10] Understanding embryonic development at single-cell resolution
    Jiang, Mengmeng
    Xu, Xue
    Guo, Guoji
    CELL REGENERATION, 2021, 10 (01)