Machine learning-based integration develops an immune-derived lncRNA signature for improving outcomes in colorectal cancer

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作者
Zaoqu Liu
Long Liu
Siyuan Weng
Chunguang Guo
Qin Dang
Hui Xu
Libo Wang
Taoyuan Lu
Yuyuan Zhang
Zhenqiang Sun
Xinwei Han
机构
[1] The First Affiliated Hospital of Zhengzhou University,Department of Interventional Radiology
[2] Interventional Institute of Zhengzhou University,Department of Hepatobiliary and Pancreatic Surgery
[3] Interventional Treatment and Clinical Research Center of Henan Province,Department of Endovascular Surgery
[4] The First Affiliated Hospital of Zhengzhou University,Department of Colorectal Surgery
[5] The First Affiliated Hospital of Zhengzhou University,Department of Cerebrovascular Disease
[6] The First Affiliated Hospital of Zhengzhou University,undefined
[7] Zhengzhou University People’s Hospital,undefined
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摘要
Long noncoding RNAs (lncRNAs) are recently implicated in modifying immunology in colorectal cancer (CRC). Nevertheless, the clinical significance of immune-related lncRNAs remains largely unexplored. In this study, we develope a machine learning-based integrative procedure for constructing a consensus immune-related lncRNA signature (IRLS). IRLS is an independent risk factor for overall survival and displays stable and powerful performance, but only demonstrates limited predictive value for relapse-free survival. Additionally, IRLS possesses distinctly superior accuracy than traditional clinical variables, molecular features, and 109 published signatures. Besides, the high-risk group is sensitive to fluorouracil-based adjuvant chemotherapy, while the low-risk group benefits more from bevacizumab. Notably, the low-risk group displays abundant lymphocyte infiltration, high expression of CD8A and PD-L1, and a response to pembrolizumab. Taken together, IRLS could serve as a robust and promising tool to improve clinical outcomes for individual CRC patients.
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