Sequencing error correction without a reference genome

被引:0
|
作者
Julie A Sleep
Andreas W Schreiber
Ute Baumann
机构
[1] The University of Adelaide,Australian Centre for Plant Functional Genomics
[2] University of South Australia,Phenomics and Bioinformatics Research Centre
[3] Centre for Cancer Biology,ACRF South Australian Cancer Genome Facility
[4] SA Pathology,School of Molecular and Biomedical Science
[5] University of Adelaide,undefined
来源
关键词
Error Rate; Reference Genome; Sequencing Error; Single Nucleotide Variant; Parent Sequence;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [1] Sequencing error correction without a reference genome
    Sleep, Julie A.
    Schreiber, Andreas W.
    Baumann, Ute
    BMC BIOINFORMATICS, 2013, 14
  • [2] Lighter: fast and memory-efficient sequencing error correction without counting
    Li Song
    Liliana Florea
    Ben Langmead
    Genome Biology, 15
  • [3] Lighter: fast and memory-efficient sequencing error correction without counting
    Song, Li
    Florea, Liliana
    Langmead, Ben
    GENOME BIOLOGY, 2014, 15 (11): : 509
  • [4] Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome
    Goodwin, Sara
    Gurtowski, James
    Ethe-Sayers, Scott
    Deshpande, Panchajanya
    Schatz, Michael C.
    McCombie, W. Richard
    GENOME RESEARCH, 2015, 25 (11) : 1750 - 1756
  • [5] Genome Sequencing Without the Fuss
    不详
    SCIENCE, 2012, 335 (6076) : 1552 - 1552
  • [6] Virus detection in high-throughput sequencing data without a reference genome of the host
    Kruppa, Jochen
    Jo, Wendy K.
    van der Vries, Erhard
    Ludlow, Martin
    Osterhaus, Albert
    Baumgaertner, Wolfgang
    Jung, Klaus
    INFECTION GENETICS AND EVOLUTION, 2018, 66 : 180 - 187
  • [7] Determining the quality and complexity of next-generation sequencing data without a reference genome
    Seyed Yahya Anvar
    Lusine Khachatryan
    Martijn Vermaat
    Michiel van Galen
    Irina Pulyakhina
    Yavuz Ariyurek
    Ken Kraaijeveld
    Johan T den Dunnen
    Peter de Knijff
    Peter AC ’t Hoen
    Jeroen FJ Laros
    Genome Biology, 15
  • [8] Determining the quality and complexity of next-generation sequencing data without a reference genome
    Anvar, Seyed Yahya
    Khachatryan, Lusine
    Vermaat, Martijn
    van Galen, Michiel
    Pulyakhina, Irina
    Ariyurek, Yavuz
    Kraaijeveld, Ken
    den Dunnen, Johan T.
    de Knijff, Peter
    't Hoen, Peter Ac
    Laros, Jeroen F. J.
    GENOME BIOLOGY, 2014, 15 (12): : 555
  • [9] Probabilistic error correction for RNA sequencing
    Le, Hai-Son
    Schulz, Marcel H.
    McCauley, Brenna M.
    Hinman, Veronica F.
    Bar-Joseph, Ziv
    NUCLEIC ACIDS RESEARCH, 2013, 41 (10)
  • [10] Error Correction and DeNovo Genome Assembly for the MinION Sequencing Reads mixing Illumina Short Reads
    Kchouk, Mehdi
    Elloumi, Mourad
    PROCEEDINGS 2015 IEEE INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICINE, 2015, : 1785 - 1785