Automatic reconstruction of metabolic pathways from identified biosynthetic gene clusters

被引:0
|
作者
Snorre Sulheim
Fredrik A. Fossheim
Alexander Wentzel
Eivind Almaas
机构
[1] NTNU - Norwegian University of Science and Technology,Department of Biotechnology and Food Science
[2] SINTEF Industry,Department of Biotechnology and Nanomedicine
[3] NTNU - Norwegian University of Science and Technology,K.G. Jebsen Center for Genetic Epidemiology
来源
关键词
Biosynthetic gene clusters; Genome-scale metabolic model; AntiSMASH; Polyketide synthases; Natural products; Heterologous expression; Non-ribosomal peptide synthetases;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [1] Automatic reconstruction of metabolic pathways from identified biosynthetic gene clusters
    Sulheim, Snorre
    Fossheim, Fredrik A.
    Wentzel, Alexander
    Almaas, Eivind
    [J]. BMC BIOINFORMATICS, 2021, 22 (01)
  • [2] Plant biosynthetic gene clusters in the context of metabolic evolution
    Smit, Samuel J.
    Lichman, Benjamin R.
    [J]. NATURAL PRODUCT REPORTS, 2022, 39 (07) : 1465 - 1482
  • [3] Heterologous expression of natural product biosynthetic gene clusters in Streptomyces coelicolor: from genome mining to manipulation of biosynthetic pathways
    Gomez-Escribano, Juan Pablo
    Bibb, Mervyn J.
    [J]. JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY, 2014, 41 (02) : 425 - 431
  • [4] Penicillium roqueforti Secondary Metabolites: Biosynthetic Pathways, Gene Clusters, and Bioactivities
    Metin, Banu
    [J]. FERMENTATION-BASEL, 2023, 9 (09):
  • [5] Biosynthetic Gene Clusters from Swine Gut Microbiome
    Wang, Leli
    Zhang, Yiru
    Xu, Juan
    Wang, Chuni
    Yin, Lanmei
    Tu, Qiang
    Yang, Huansheng
    Yin, Jia
    [J]. MICROORGANISMS, 2023, 11 (02)
  • [6] New tools for reconstruction and heterologous expression of natural product biosynthetic gene clusters
    Luo, Yunzi
    Enghiad, Behnam
    Zhao, Huimin
    [J]. NATURAL PRODUCT REPORTS, 2016, 33 (02) : 174 - 182
  • [7] Survey of Biosynthetic Gene Clusters from Sequenced Myxobacteria Reveals Unexplored Biosynthetic Potential
    Gregory, Katherine
    Salvador, Laura A.
    Akbar, Shukria
    Adaikpoh, Barbara, I
    Stevens, D. Cole
    [J]. MICROORGANISMS, 2019, 7 (06)
  • [8] Strategy for efficient cloning of biosynthetic gene clusters from fungi
    Ruixin Li
    Zi Xin Li
    Ke Ma
    Gang Wang
    Wei Li
    Hong-Wei Liu
    Wen-Bing Yin
    Peng Zhang
    Xing-Zhong Liu
    [J]. Science China Life Sciences, 2019, 62 (08) : 1087 - 1095
  • [9] Strategy for efficient cloning of biosynthetic gene clusters from fungi
    Ruixin Li
    ZiXin Li
    Ke Ma
    Gang Wang
    Wei Li
    Hong-Wei Liu
    Wen-Bing Yin
    Peng Zhang
    Xing-Zhong Liu
    [J]. Science China Life Sciences, 2019, 62 : 1087 - 1095
  • [10] Diazaquinomycin Biosynthetic Gene Clusters from Marine and Freshwater Actinomycetes
    Braesel, Jana
    Lee, Jung-Ho
    Arnould, Benoit
    Murphy, Brian T.
    Eustaquio, Alessandra S.
    [J]. JOURNAL OF NATURAL PRODUCTS, 2019, 82 (04): : 937 - 946