Automated high-throughput mapping of promoter-enhancer interactions in zebrafish embryos

被引:0
|
作者
Jochen Gehrig
Markus Reischl
Éva Kalmár
Marco Ferg
Yavor Hadzhiev
Andreas Zaucker
Chengyi Song
Simone Schindler
Urban Liebel
Ferenc Müller
机构
[1] Institute of Toxicology and Genetics,Department of Medical and Molecular Genetics
[2] Forschungszentrum Karlsruhe,undefined
[3] School of Clinical and Experimental Medicine,undefined
[4] College of Medical and Dental Sciences,undefined
[5] University of Birmingham,undefined
[6] Institute of Applied Computer Science,undefined
[7] Forschungszentrum Karlsruhe,undefined
[8] Present address: College of Animal Science and Technology,undefined
[9] Yangzhou University,undefined
[10] Jiangsu,undefined
[11] China.,undefined
来源
Nature Methods | 2009年 / 6卷
关键词
D O I
暂无
中图分类号
学科分类号
摘要
Methods for automated fluorescence imaging allow high-throughput examination of reporter expression patterns in zebrafish embryos. They are applied to mapping promoter-enhancer interactions in this organism.
引用
收藏
页码:911 / 916
页数:5
相关论文
共 50 条
  • [1] Automated high-throughput mapping of promoter-enhancer interactions in zebrafish embryos
    Gehrig, Jochen
    Reischl, Markus
    Kalmar, Eva
    Ferg, Marco
    Hadzhiev, Yavor
    Zaucker, Andreas
    Song, Chengyi
    Schindler, Simone
    Liebel, Urban
    Mueller, Ferenc
    NATURE METHODS, 2009, 6 (12) : 911 - U71
  • [2] Capturing promoter-enhancer interactions in high throughput
    Rusk, Nicole
    NATURE METHODS, 2014, 11 (03) : 231 - 231
  • [3] Capturing promoter-enhancer interactions in high throughput
    Nicole Rusk
    Nature Methods, 2014, 11 : 231 - 231
  • [4] Methods for Automated High-Throughput Toxicity Testing Using Zebrafish Embryos
    Alshut, Ruediger
    Legradi, Jessica
    Liebel, Urban
    Yang, Lixin
    van Wezel, Jos
    Straehle, Uwe
    Mikut, Ralf
    Reischl, Markus
    KI 2010: ADVANCES IN ARTIFICIAL INTELLIGENCE, 2010, 6359 : 219 - 226
  • [5] A versatile, automated and high-throughput drug screening platform for zebrafish embryos
    Lubin, Alexandra
    Otterstrom, Jason
    Hoade, Yvette
    Bjedov, Ivana
    Stead, Eleanor
    Whelan, Matthew
    Gestri, Gaia
    Paran, Yael
    Payne, Elspeth
    BIOLOGY OPEN, 2021, 10 (09):
  • [6] In the loop: promoter-enhancer interactions and bioinformatics
    Mora, Antonio
    Sandve, Geir Kjetil
    Gabrielsen, Odd Stokke
    Eskeland, Ragnhild
    BRIEFINGS IN BIOINFORMATICS, 2016, 17 (06) : 980 - 995
  • [7] High-Throughput Screening of Zebrafish Embryos Using Automated Heart Detection and Imaging
    Spomer, Waldemar
    Pfriem, Alexander
    Alshut, Ruediger
    Just, Steffen
    Pylatiuk, Christian
    JALA, 2012, 17 (06): : 435 - 442
  • [8] Automated high-throughput heartbeat quantification in medaka and zebrafish embryos under physiological conditions
    Jakob Gierten
    Christian Pylatiuk
    Omar T. Hammouda
    Christian Schock
    Johannes Stegmaier
    Joachim Wittbrodt
    Jochen Gehrig
    Felix Loosli
    Scientific Reports, 10
  • [9] Automated high-throughput heartbeat quantification in medaka and zebrafish embryos under physiological conditions
    Gierten, Jakob
    Pylatiuk, Christian
    Hammouda, Omar T.
    Schock, Christian
    Stegmaier, Johannes
    Wittbrodt, Joachim
    Gehrig, Jochen
    Loosli, Felix
    SCIENTIFIC REPORTS, 2020, 10 (01)
  • [10] High-throughput functional comparison of promoter and enhancer activities
    Nguyen, Thomas A.
    Jones, Richard D.
    Snavely, Andrew R.
    Pfenning, Andreas R.
    Kirchner, Rory
    Hemberg, Martin
    Gray, Jesse M.
    GENOME RESEARCH, 2016, 26 (08) : 1023 - 1033