Tumor diversity and the trade-off between universal cancer tasks

被引:0
|
作者
Jean Hausser
Pablo Szekely
Noam Bar
Anat Zimmer
Hila Sheftel
Carlos Caldas
Uri Alon
机构
[1] Weizmann Institute of Science,Department of Molecular Cell Biology
[2] University of Cambridge,Department of Oncology and Cancer Research UK Cambridge Institute
[3] Cancer Research UK Cambridge Cancer Centre,Breast Cancer Programme
来源
关键词
D O I
暂无
中图分类号
学科分类号
摘要
Recent advances have enabled powerful methods to sort tumors into prognosis and treatment groups. We are still missing, however, a general theoretical framework to understand the vast diversity of tumor gene expression and mutations. Here we present a framework based on multi-task evolution theory, using the fact that tumors need to perform multiple tasks that contribute to their fitness. We find that trade-offs between tasks constrain tumor gene-expression to a continuum bounded by a polyhedron whose vertices are gene-expression profiles, each specializing in one task. We find five universal cancer tasks across tissue-types: cell-division, biomass and energy, lipogenesis, immune-interaction and invasion and tissue-remodeling. Tumors that specialize in a task are sensitive to drugs that interfere with this task. Driver, but not passenger, mutations tune gene-expression towards specialization in specific tasks. This approach can integrate additional types of molecular data into a framework of tumor diversity grounded in evolutionary theory.
引用
收藏
相关论文
共 50 条
  • [1] Tumor diversity and the trade-off between universal cancer tasks
    Hausser, Jean
    Szekely, Pablo
    Bar, Noam
    Zimmer, Anat
    Sheftel, Hila
    Caldas, Carlos
    Alon, Uri
    [J]. NATURE COMMUNICATIONS, 2019, 10 (1)
  • [2] Exploiting the Trade-off between Convergence and Diversity Indicators
    Guillermo Falcon-Cardona, Jesus
    Ishibuchi, Hisao
    Coello Coello, Carlos A.
    [J]. 2020 IEEE SYMPOSIUM SERIES ON COMPUTATIONAL INTELLIGENCE (SSCI), 2020, : 141 - 148
  • [3] A universal trade-off between growth and lag in fluctuating environments
    Basan, Markus
    Honda, Tomoya
    Christodoulou, Dimitris
    Horl, Manuel
    Chang, Yu-Fang
    Leoncini, Emanuele
    Mukherjee, Avik
    Okano, Hiroyuki
    Taylor, Brian R.
    Silverman, Josh M.
    Sanchez, Carlos
    Williamson, James R.
    Paulsson, Johan
    Hwa, Terence
    Sauer, Uwe
    [J]. NATURE, 2020, 584 (7821) : 470 - +
  • [4] A universal trade-off between growth and lag in fluctuating environments
    Markus Basan
    Tomoya Honda
    Dimitris Christodoulou
    Manuel Hörl
    Yu-Fang Chang
    Emanuele Leoncini
    Avik Mukherjee
    Hiroyuki Okano
    Brian R. Taylor
    Josh M. Silverman
    Carlos Sanchez
    James R. Williamson
    Johan Paulsson
    Terence Hwa
    Uwe Sauer
    [J]. Nature, 2020, 584 : 470 - 474
  • [5] Universal Trade-Off Relation between Power and Efficiency for Heat Engines
    Shiraishi, Naoto
    Saito, Keiji
    Tasaki, Hal
    [J]. PHYSICAL REVIEW LETTERS, 2016, 117 (19)
  • [6] Is there a trade-off between species diversity and genetic diversity in forest tree communities?
    Wehenkel, Christian
    Bergmann, Fritz
    Gregorius, Hans-Rolf
    [J]. PLANT ECOLOGY, 2006, 185 (01) : 151 - 161
  • [7] Trade-off between taxon diversity and functional diversity in European lake ecosystems
    Grossmann, Lars
    Beisser, Daniela
    Bock, Christina
    Chatzinotas, Antonis
    Jensen, Manfred
    Preisfeld, Angelika
    Psenner, Roland
    Rahmann, Sven
    Wodniok, Sabina
    Boenigk, Jens
    [J]. MOLECULAR ECOLOGY, 2016, 25 (23) : 5876 - 5888
  • [8] The Diversity-Bandwidth Trade-off
    Aral, Sinan
    Van Alstyne, Marshall
    [J]. AMERICAN JOURNAL OF SOCIOLOGY, 2011, 117 (01) : 90 - 171
  • [9] Is there a trade-off between species diversity and genetic diversity in forest tree communities?
    Christian Wehenkel
    Fritz Bergmann
    Hans-Rolf Gregorius
    [J]. Plant Ecology, 2006, 185 : 151 - 161
  • [10] ABSOLUTE JUDGMENTS IN SPEEDED TASKS - QUANTIFICATION OF TRADE-OFF BETWEEN SPEED AND ACCURACY
    PACHELLA, RG
    FISHER, DF
    KARSH, R
    [J]. PSYCHONOMIC SCIENCE, 1968, 12 (06): : 225 - &