Complete genome sequence of thermophilic Bacillus smithii type strain DSM 4216T

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作者
Elleke F. Bosma
Jasper J. Koehorst
Sacha A. F. T. van Hijum
Bernadet Renckens
Bastienne Vriesendorp
Antonius H. P. van de Weijer
Peter J. Schaap
Willem M. de Vos
John van der Oost
Richard van Kranenburg
机构
[1] Wageningen University,Laboratory of Microbiology
[2] Technical University of Denmark,Present address: The Novo Nordisk Foundation Center for Biosustainability
[3] Wageningen University,Laboratory of Systems and Synthetic Biology
[4] CMBI,undefined
[5] NCMLS,undefined
[6] Corbion,undefined
关键词
Genome sequence; Lactic acid; Thermophile; Thermophilic bacillus; Biotechnology;
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摘要
Bacillus smithii is a facultatively anaerobic, thermophilic bacterium able to use a variety of sugars that can be derived from lignocellulosic feedstocks. Being genetically accessible, it is a potential new host for biotechnological production of green chemicals from renewable resources. We determined the complete genomic sequence of the B. smithii type strain DSM 4216T, which consists of a 3,368,778 bp chromosome (GenBank accession number CP012024.1) and a 12,514 bp plasmid (GenBank accession number CP012025.1), together encoding 3880 genes. Genome annotation via RAST was complemented by a protein domain analysis. Some unique features of B. smithii central metabolism in comparison to related organisms included the lack of a standard acetate production pathway with no apparent pyruvate formate lyase, phosphotransacetylase, and acetate kinase genes, while acetate was the second fermentation product.
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