WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences

被引：0
|
作者：
Giulio Pavesi
Federico Zambelli
Graziano Pesole
机构：
[1] University of Milan,Dipartimento di Scienze Biomolecolari e Biotecnologie
[2] University of Bari,Dipartimento di Biochimica e Biologia Molecolare "E. Quagliariello"
[3] Istituto Tecnologie Biomediche – Consiglio Nazionale delle Ricerche,undefined
来源：
BMC Bioinformatics | / 8卷
关键词：
Reference Sequence; Transcription Start Site; Relative Score; Phylogenetic Footprinting; Positional Conservation;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [1] WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences
    Pavesi, Giulio
    Zambelli, Federico
    Pesole, Graziano
    BMC BIOINFORMATICS, 2007, 8 (1)
  • [2] An algorithm for finding conserved secondary structure motifs in unaligned RNA sequences
    Pavesi, G
    Mauri, G
    Pesole, G
    JOURNAL OF COMPUTER SCIENCE AND TECHNOLOGY, 2004, 19 (01) : 2 - 12
  • [3] An algorithm for finding conserved secondary structure motifs in unaligned RNA sequences
    Giulio Pavesi
    Giancarlo Mauri
    Graziano Pesole
    Journal of Computer Science and Technology, 2004, 19 : 2 - 12
  • [4] RNAProfile: an algorithm for finding conserved secondary structure motifs in unaligned RNA sequences
    Pavesi, G
    Mauri, G
    Stefani, M
    Pesole, G
    NUCLEIC ACIDS RESEARCH, 2004, 32 (10) : 3258 - 3269
  • [5] MotifMark: Finding Regulatory Motifs in DNA Sequences
    Hassanzadeh, Hamid Reza
    Kolhe, Pushkar
    Isbell, Charles L.
    Wang, May D.
    2017 39TH ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY (EMBC), 2017, : 3890 - 3893
  • [6] Comparison of five methods for finding conserved sequences in multiple alignments of gene regulatory regions
    Stojanovic, N
    Florea, L
    Riemer, C
    Gumucio, D
    Slightom, J
    Goodman, M
    Miller, W
    Hardison, R
    NUCLEIC ACIDS RESEARCH, 1999, 27 (19) : 3899 - 3910
  • [7] A niched Pareto genetic algorithm for finding variable length regulatory motifs in DNA sequences
    Vijayvargiya, Shripal
    Shukla, Pratyoosh
    3 BIOTECH, 2012, 2 (02): : 141 - 148
  • [8] A niched Pareto genetic algorithm for finding variable length regulatory motifs in DNA sequences
    Shripal Vijayvargiya
    Pratyoosh Shukla
    3 Biotech, 2012, 2 : 141 - 148
  • [9] The Improvement and Implementation in the Algorithm of Finding Maximal Motifs in DNA Sequences
    Fu Yifan
    Zhou Dongdai
    Zhong Shaochun
    Zhao Ruiqing
    2008 3RD INTERNATIONAL CONFERENCE ON INTELLIGENT SYSTEM AND KNOWLEDGE ENGINEERING, VOLS 1 AND 2, 2008, : 176 - +
  • [10] PhyME: A probabilistic algorithm for finding motifs in sets of orthologous sequences
    Sinha, S
    Blanchette, M
    Tompa, M
    BMC BIOINFORMATICS, 2004, 5 (1)
12345