PhyInformR: phylogenetic experimental design and phylogenomic data exploration in R

被引:0
|
作者
Alex Dornburg
J. Nick Fisk
Jules Tamagnan
Jeffrey P. Townsend
机构
[1] North Carolina Museum of Natural Sciences,Department of Biostatistics
[2] Yale University,Center for Infectious Disease Modeling and Analysis, Yale School of Public Health
[3] Yale University,Department of Ecology and Evolutionary Biology
[4] Yale University,Program in Computational Biology and Bioinformatics
[5] Yale University,undefined
来源
关键词
Branch Length; Internode Length; Open Source Program; Open Source Software Package; Empirical Dataset;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [1] PhyInformR: phylogenetic experimental design and phylogenomic data exploration in R
    Dornburg, Alex
    Fisk, J. Nick
    Tamagnan, Jules
    Townsend, Jeffrey P.
    [J]. BMC EVOLUTIONARY BIOLOGY, 2016, 16 : 1 - 7
  • [2] Phylogenetic Placement of Myxozoa: An exploration of conflict between phylogenomic and rDNA molecular data
    Evans, N. M.
    Cartwright, P.
    [J]. INTEGRATIVE AND COMPARATIVE BIOLOGY, 2010, 50 : E51 - E51
  • [3] Phylogenetic position of nemertea derived from phylogenomic data
    Struck, Torsten H.
    Fisse, Frauke
    [J]. MOLECULAR BIOLOGY AND EVOLUTION, 2008, 25 (04) : 728 - 736
  • [4] A phylogenomic data-driven exploration of viral origins and evolution
    Nasir, Arshan
    Caetano-Anolles, Gustavo
    [J]. SCIENCE ADVANCES, 2015, 1 (08):
  • [5] Evaluating Phylogenetic Informativeness as a Predictor of Phylogenetic Signal for Metazoan, Fungal, and Mammalian Phylogenomic Data Sets
    Lopez-Giraldez, Francesc
    Moeller, Andrew H.
    Townsend, Jeffrey P.
    [J]. BIOMED RESEARCH INTERNATIONAL, 2013, 2013
  • [6] A New Orthology Assessment Method for Phylogenomic Data: Unrooted Phylogenetic Orthology
    Ballesteros, Jesus A.
    Hormiga, Gustavo
    [J]. MOLECULAR BIOLOGY AND EVOLUTION, 2016, 33 (08) : 2117 - 2134
  • [7] The Phylogenetic Position of Myxozoa: Exploring Conflicting Signals in Phylogenomic and Ribosomal Data Sets
    Evans, Nathaniel M.
    Holder, Mark T.
    Barbeitos, Marcos S.
    Okamura, Beth
    Cartwright, Paulyn
    [J]. MOLECULAR BIOLOGY AND EVOLUTION, 2010, 27 (12) : 2733 - 2746
  • [8] Phylogenomic resolution of sea spider relationships via integration of phylogenetic data classes
    Sharma, P. P.
    Arango, C. P.
    Ballesteros, J. A.
    Brenneis, G.
    Dilly, G. F.
    Setton, E. V. W.
    Wheeler, W. C.
    [J]. INTEGRATIVE AND COMPARATIVE BIOLOGY, 2020, 60 : E213 - E213
  • [9] The impact of GC bias on phylogenetic accuracy using targeted enrichment phylogenomic data
    Bossert, Silas
    Murray, Elizabeth A.
    Blaimer, Bonnie B.
    Danforth, Bryan N.
    [J]. MOLECULAR PHYLOGENETICS AND EVOLUTION, 2017, 111 : 149 - 157
  • [10] Data exploration in phylogenetic inference: scientific, heuristic, or neither
    Grant, T
    Kluge, AG
    [J]. CLADISTICS, 2003, 19 (05) : 379 - 418