Molecular characterization of plasma virome of hepatocellular carcinoma (HCC) patients

被引:0
|
作者
Khan, Niamat Ullah [1 ]
Sadiq, Asma [2 ]
Khan, Jadoon [1 ,3 ]
Basharat, Nosheen [2 ]
Hassan, Zulfiqar Ul [3 ]
Ali, Ijaz [1 ,8 ]
Shah, Tawaf Ali [4 ]
Bourhia, Mohammed [5 ]
Bin Jardan, Yousef A. [6 ]
Wondmie, Gezahign Fentahun [7 ]
机构
[1] COMSATS Univ, Dept Biosci, Mol Virol Lab, Islamabad, Pakistan
[2] Univ Jhang, Dept Microbiol, Jhang, Punjab, Pakistan
[3] Iqra Univ, Dept Allied Hlth Sci, Chak Shahzad Campus, Islamabad, Pakistan
[4] Shandong Univ Technol, Coll Agr Engn & Food Sci, Zibo 255000, Peoples R China
[5] Ibn Zohr Univ, Fac Sci, Lab Biotechnol & Nat Resources Valorizat, Agadir 80060, Morocco
[6] King Saud Univ, Coll Pharm, Dept Pharmaceut, POB 11451, Riyadh, Saudi Arabia
[7] Bahir Dar Univ, Dept Biol, POB 79, Bahir Dar, Ethiopia
[8] Gulf Univ Sci & Technol, Ctr Appl Math & Bioinformat CAMB, Kuwait, Kuwait
关键词
Metagenomics; Anelloviruses; Viral etiologies; Hepatocellular carcinoma; Pathogenesis; EPSTEIN-BARR-VIRUS; TORQUE-TENO VIRUS; AGENT SEN VIRUS; HEPATITIS-C; CYTOMEGALOVIRUS-INFECTION; INTESTINAL VIROME; UNITED-STATES; BLOOD-DONORS; DNA; LIVER;
D O I
10.1186/s13568-024-01696-2
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Hepatocellular carcinoma (HCC) stands as the most common cancer type, arising from various causes, and responsible for a substantial number of cancer-related fatalities. Recent advancements in viral metagenomics have empowered scientists to delve into the intricate diversity of the virosphere, viral evolution, interactions between viruses and their hosts, and the identification of viral causes behind disease outbreaks, the development of specific symptoms, and their potential role in altering the host's physiology. The present study had the objective of "Molecular Characterization of HBV, HCV, anelloviruses, CMV, SENV-D, SENV-H, HEV, and HPV viruses among individuals suffering from HCC." A total of 381 HCC patients contributed 10 cc of blood each for this study. The research encompassed the assessment of tumor markers, followed by molecular characterization of HBV, HCV, Anelloviruses (TTV, TTMV, and TTMDV), SENV-H and SENV-D viruses, HEV, CMV, and HPV, as well as histopathological examinations. The outcomes of this study revealed that majority of the HCC patients 72.4% (276/381) were male as compared to females. HCV infection, at 76.4% (291 out of 381), exhibited a significant association (p < 0.05) with HCC. Most patients displayed singular lesions in the liver, with Child Pugh Score Type B being the predominant finding in 45.2% of cases. Plasma virome analysis indicated the prevalence of TTMDV (75%), followed by TTMV (70%) and TTV (42.1%) among anelloviruses in HCC patients. Similarly, SENV-H (52%) was followed by SENV-D (20%), with co-infections at 15%. The presence of CMV and HEV among the HCC patients was recorded 5% each however 3.5% of the patients showed the presence of HPV. In conclusion, this study underscores that HCC patients serve as reservoirs for various pathogenic and non-pathogenic viruses, potentially contributing to the development, progression, and severity of the disease.
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页数:11
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