Evaluation of strategies for the assembly of diverse bacterial genomes using MinION long-read sequencing

被引：0
|
作者：
Sarah Goldstein
Lidia Beka
Joerg Graf
Jonathan L. Klassen
机构：
[1] University of Connecticut,Department of Molecular and Cell Biology
来源：
BMC Genomics | / 20卷
关键词：
Oxford Nanopore MinION; Genome sequencing; Genome assembly; Secondary metabolites; Insertion sequences;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [1] Evaluation of strategies for the assembly of diverse bacterial genomes using MinION long-read sequencing
    Goldstein, Sarah
    Beka, Lidia
    Graf, Joerg
    Klassen, Jonathan L.
    BMC GENOMICS, 2019, 20 (1)
  • [2] Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes
    De Maio, Nicola
    Shaw, Liam P.
    Hubbard, Alasdair
    George, Sophie
    Sanderson, Nicholas D.
    Swann, Jeremy
    Wick, Ryan
    AbuOun, Manal
    Stubberfield, Emma
    Hoosdally, Sarah J.
    Crook, Derrick W.
    Peto, Timothy E. A.
    Sheppard, Anna E.
    Bailey, Mark J.
    Read, Daniel S.
    Anjum, Muna F.
    Walker, A. Sarah
    Stoesser, Nicole
    Brett, H.
    Bowes, M.
    Chau, K.
    Duggett, N.
    Gilson, D.
    Gweon, H. S.
    Floosdally, S.
    Kavanaugh, J.
    Jones, H.
    Sebra, R.
    Smith, R.
    Swann, J.
    Woodford, N.
    MICROBIAL GENOMICS, 2019, 5 (09):
  • [3] Tools and Strategies for Long-Read Sequencing and De Novo Assembly of Plant Genomes
    Jung, Hyungtaek
    Winefield, Christopher
    Bombarely, Aureliano
    Prentis, Peter
    Waterhouse, Peter
    TRENDS IN PLANT SCIENCE, 2019, 24 (08) : 700 - 724
  • [4] Comparison of Long-Read Methods for Sequencing and Assembly of Lepidopteran Pest Genomes
    Zhang, Tong
    Xing, Weiqing
    Wang, Aoming
    Zhang, Na
    Jia, Ling
    Ma, Sanyuan
    Xia, Qingyou
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2023, 24 (01)
  • [5] Long-read sequencing of new Drosophila genomes
    Koch L.
    Nature Reviews Genetics, 2021, 22 (10) : 625 - 625
  • [6] Completion of draft bacterial genomes by long-read sequencing of synthetic genomic pools
    Hooman Derakhshani
    Steve P. Bernier
    Victoria A. Marko
    Michael G. Surette
    BMC Genomics, 21
  • [7] Completion of draft bacterial genomes by long-read sequencing of synthetic genomic pools
    Derakhshani, Hooman
    Bernier, Steve P.
    Marko, Victoria A.
    Surette, Michael G.
    BMC GENOMICS, 2020, 21 (01)
  • [8] Reconstructing complex regions of genomes using long-read sequencing technology
    Huddleston, John
    Ranade, Swati
    Malig, Maika
    Antonacci, Francesca
    Chaisson, Mark
    Hon, Lawrence
    Sudmant, Peter H.
    Graves, Tina A.
    Alkan, Can
    Dennis, Megan Y.
    Wilson, Richard K.
    Turner, Stephen W.
    Korlach, Jonas
    Eichler, Evan E.
    GENOME RESEARCH, 2014, 24 (04) : 688 - 696
  • [9] MinION-based long-read sequencing and assembly extends the &ITCaenorhabditis elegans&IT reference genome
    Tyson, John R.
    O'Neil, Nigel J.
    Jain, Miten
    Olsen, Hugh E.
    Hieter, Philip
    Snutch, Terrance P.
    GENOME RESEARCH, 2018, 28 (02) : 266 - 274
  • [10] Long-read Sequencing and de novo Genome Assembly of Three Aspergillus fumigatus Genomes
    Hemmings, Samuel J.
    Rhodes, Johanna L.
    Fisher, Matthew C.
    MYCOPATHOLOGIA, 2023, 188 (04) : 409 - 412
12345