Light-weight reference-based compression of FASTQ data

被引：0
|
作者：
Yongpeng Zhang
Linsen Li
Yanli Yang
Xiao Yang
Shan He
Zexuan Zhu
机构：
[1] Shenzhen University,College of Computer Science and Software Engineering
[2] The Broad Institute,undefined
[3] School of Computer Science,undefined
[4] University of Birmingham,undefined
来源：
BMC Bioinformatics | / 16卷
关键词：
Quality Score; Compression Ratio; Encode Scheme; Next Generation Sequencing Data; FASTQ Format;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [1] Light-weight reference-based compression of FASTQ data
    Zhang, Yongpeng
    Li, Linsen
    Yang, Yanli
    Yang, Xiao
    He, Shan
    Zhu, Zexuan
    [J]. BMC BIOINFORMATICS, 2015, 16
  • [2] FQZip: Lossless Reference-Based Compression of Next Generation Sequencing Data in FASTQ Format
    Zhang, Yongpeng
    Li, Linsen
    Xiao, Jun
    Yang, Yanli
    Zhu, Zexuan
    [J]. PROCEEDINGS OF THE 18TH ASIA PACIFIC SYMPOSIUM ON INTELLIGENT AND EVOLUTIONARY SYSTEMS, VOL 2, 2015, : 127 - 135
  • [3] LW-FQZip 2: a parallelized reference-based compression of FASTQ files
    Huang, Zhi-An
    Wen, Zhenkun
    Deng, Qingjin
    Chu, Ying
    Sun, Yiwen
    Zhu, Zexuan
    [J]. BMC BIOINFORMATICS, 2017, 18
  • [4] LW-FQZip 2: a parallelized reference-based compression of FASTQ files
    Zhi-An Huang
    Zhenkun Wen
    Qingjin Deng
    Ying Chu
    Yiwen Sun
    Zexuan Zhu
    [J]. BMC Bioinformatics, 18
  • [5] G-FQZip: Lossless Reference-Based Compression of FASTQ files Using GPUs
    Peng, Cong
    Deng, Qingjin
    Huang, Zhi-An
    Sun, Yiwen
    Zhu, Zexuan
    [J]. 2017 13TH INTERNATIONAL CONFERENCE ON COMPUTATIONAL INTELLIGENCE AND SECURITY (CIS), 2017, : 553 - 556
  • [6] RENANO: a REference-based compressor for NANOpore FASTQ files
    Dufort y Alvarez, Guillermo
    Seroussi, Gadiel
    Smircich, Pablo
    Sotelo-Silveira, Jose
    Ochoa, Idoia
    Martin, Alvaro
    [J]. BIOINFORMATICS, 2021, 37 (24) : 4862 - 4864
  • [7] FPGA Acceleration of Reference-Based Compression for Genomic Data
    Arram, James
    Pflanzer, Moritz
    Kaplan, Thomas
    Luk, Wayne
    [J]. 2015 INTERNATIONAL CONFERENCE ON FIELD PROGRAMMABLE TECHNOLOGY (FPT), 2015, : 9 - 16
  • [8] Context Based Compression of FASTQ Data
    Mallavarapu, Rama Srikanth
    Chinnamalliah, Pandu Kumar
    Bopardikar, Ajit S.
    Ahn, TaeJin
    [J]. 2016 IEEE INTERNATIONAL SYMPOSIUM ON CIRCUITS AND SYSTEMS (ISCAS), 2016, : 97 - 100
  • [9] No-Reference Compression of Genomic Data Stored In FASTQ Format
    Bhola, Vishal
    Bopardikar, Ajit S.
    Narayanan, Rangavittal
    Lee, Kyusang
    Ahn, TaeJin
    [J]. 2011 IEEE INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICINE (BIBM 2011), 2011, : 147 - 150
  • [10] Exploring Light-weight Cryptography for Efficient and Secure Lossy Data Compression
    Shan, Ruiwen
    Di, Sheng
    Calhoun, Jon C.
    Cappello, Franck
    [J]. 2022 IEEE INTERNATIONAL CONFERENCE ON CLUSTER COMPUTING (CLUSTER 2022), 2022, : 23 - 34
12345