The impact of RNA extraction method on accurate RNA sequencing from formalin-fixed paraffin-embedded tissues

被引：0
|
作者：
Michal Marczyk
Chunxiao Fu
Rosanna Lau
Lili Du
Alexander J. Trevarton
Bruno V. Sinn
Rebekah E. Gould
Lajos Pusztai
Christos Hatzis
W. Fraser Symmans
机构：
[1] Yale Cancer Center,Data Mining Division
[2] Yale School of Medicine,Department of Pathology and Translational Molecular Pathology
[3] Silesian University of Technology,undefined
[4] The University of Texas MD Anderson Cancer Center,undefined
[5] Institute of Pathology,undefined
[6] Charité Universitätsmedizin Berlin,undefined
来源：
BMC Cancer | / 19卷
关键词：
RNA extraction; RNA sequencing; FFPE-based clinical assay;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [1] The impact of RNA extraction method on accurate RNA sequencing from formalin-fixed paraffin-embedded tissues
    Marczyk, Michal
    Fu, Chunxiao
    Lau, Rosanna
    Du, Lili
    Trevarton, Alexander J.
    Sinn, Bruno V.
    Gould, Rebekah E.
    Pusztai, Lajos
    Hatzis, Christos
    Symmans, W. Fraser
    [J]. BMC CANCER, 2019, 19 (01)
  • [2] Optimization of RNA extraction from formalin-fixed, paraffin-embedded lymphoid tissues
    Chen, Jun
    Byrne, Gerald E., Jr.
    Lossos, Izidore S.
    [J]. DIAGNOSTIC MOLECULAR PATHOLOGY, 2007, 16 (02) : 61 - 72
  • [3] Optimized Method for High-Quality RNA Extraction from Formalin-Fixed Paraffin-Embedded Tissues
    Dara, Mahintaj
    Dianatpour, Mehdi
    Omidifar, Navid
    Azarpira, Negar
    Nili-Ahmadabadi, Amir
    [J]. CHEMISTRYSELECT, 2024, 9 (16):
  • [4] Extraction of RNA from formalin-fixed, paraffin-embedded equine placenta
    Dini, Pouya
    Esteller-Vico, Alejandro
    Scoggin, Kirsten E.
    Daels, Peter
    Ball, Barry A.
    [J]. REPRODUCTION IN DOMESTIC ANIMALS, 2019, 54 (03) : 627 - 634
  • [5] A simple method for RNA isolation from formalin-fixed and paraffin-embedded lymphatic tissues
    Körbler, T
    Grskovic, M
    Dominis, M
    Antica, M
    [J]. EXPERIMENTAL AND MOLECULAR PATHOLOGY, 2003, 74 (03) : 336 - 340
  • [6] RNA Sequencing of Formalin-Fixed and Paraffin-Embedded Tissue as a Complementary Method in Ophthalmopathology
    Schlunck, Guenther
    Boneva, Stefaniya
    Wolf, Ulian
    Schlecht, Anja
    Reinhard, Thomas
    Auw-Haedrich, Claudia
    Lange, Clemens
    [J]. KLINISCHE MONATSBLATTER FUR AUGENHEILKUNDE, 2020, 237 (07) : 860 - 866
  • [7] The paraffin-embedded RNA metric (PERM) for RNA isolated from formalin-fixed, paraffin-embedded tissue
    Chung, Joon-Yong
    Cho, Hanbyoul
    Hewitt, Stephen M.
    [J]. BIOTECHNIQUES, 2016, 60 (05) : 239 - +
  • [8] Extraction of RNA from formalin-fixed, paraffin-embedded archival hepatocellular carcinoma
    Southern, P. B.
    Lewis, F.
    Quirke, P.
    Bennett, S.
    Wyatt, J.
    Millson, C. E.
    [J]. GUT, 2007, 56 : A134 - A134
  • [9] RNA Extraction Method Impacts Quality Metrics and Sequencing Results in Formalin-Fixed, Paraffin-Embedded Tissue Samples
    Decruyenaere, Philippe
    Verniers, Kimberly
    Poma-Soto, Franco
    Van Dorpe, Jo
    Offner, Fritz
    Vandesompele, Jo
    [J]. LABORATORY INVESTIGATION, 2023, 103 (02)
  • [10] Single Nucleus Total RNA Sequencing of Formalin-Fixed Paraffin-Embedded Gliomas
    Xu, Ziye
    Chen, Lingchao
    Lin, Xin
    Lyu, Yuexiao
    Zhou, Mofei
    Chen, Haide
    Zhang, Heng
    Zhang, Tianyu
    Chen, Yu
    Suo, Yuanzhen
    Liang, Qian
    Qin, Zhiyong
    Wang, Yongcheng
    [J]. SMALL METHODS, 2024,
12345