Medium throughput bisulfite sequencing for accurate detection of 5-methylcytosine and 5-hydroxymethylcytosine

被引:0
|
作者
Gary G. Chen
Jeffrey A. Gross
Pierre-Eric Lutz
Kathryn Vaillancourt
Gilles Maussion
Alexandre Bramoulle
Jean-François Théroux
Elena S. Gardini
Ulrike Ehlert
Geneviève Bourret
Aurélie Masurel
Pierre Lepage
Naguib Mechawar
Gustavo Turecki
Carl Ernst
机构
[1] McGill Group for Suicide Studies,Department of Psychiatry
[2] Douglas Mental Health University Institute,Genome Quebec Innovation Centre
[3] McGill University,undefined
[4] Montreal,undefined
[5] University of Zurich,undefined
[6] Clinical Psychology and Psychotherapy,undefined
[7] McGill University,undefined
来源
BMC Genomics | / 18卷
关键词
Targeted bisulfite sequencing; 5-methylcytosine; 5-hydroxymethylcytosine; Next-generation sequencing; Customized MiSeq sequencing; Multiplexed PCR-directed BS-amplicons; Multiplexed barcoding of target amplicon libraries;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [1] Medium throughput bisulfite sequencing for accurate detection of 5-methylcytosine and 5-hydroxymethylcytosine
    Chen, Gary G.
    Gross, Jeffrey A.
    Lutz, Pierre-Eric
    Vaillancourt, Kathryn
    Maussion, Gilles
    Bramoulle, Alexandre
    Theroux, Jean-Franois
    Gardini, Elena S.
    Ehlert, Ulrike
    Bourret, Genevieve
    Masurel, Aurelie
    Lepage, Pierre
    Mechawar, Naguib
    Turecki, Gustavo
    Ernst, Carl
    [J]. BMC GENOMICS, 2017, 18
  • [2] Oxidative bisulfite sequencing of 5-methylcytosine and 5-hydroxymethylcytosine
    Booth, Michael J.
    Ost, Tobias W. B.
    Beraldi, Dario
    Bell, Neil M.
    Branco, Miguel R.
    Reik, Wolf
    Balasubramanian, Shankar
    [J]. NATURE PROTOCOLS, 2013, 8 (10) : 1841 - 1851
  • [3] Oxidative bisulfite sequencing of 5-methylcytosine and 5-hydroxymethylcytosine
    Michael J Booth
    Tobias W B Ost
    Dario Beraldi
    Neil M Bell
    Miguel R Branco
    Wolf Reik
    Shankar Balasubramanian
    [J]. Nature Protocols, 2013, 8 : 1841 - 1851
  • [4] Bisulfite-free direct detection of 5-methylcytosine and 5-hydroxymethylcytosine at base resolution
    Yibin Liu
    Paulina Siejka-Zielińska
    Gergana Velikova
    Ying Bi
    Fang Yuan
    Marketa Tomkova
    Chunsen Bai
    Lei Chen
    Benjamin Schuster-Böckler
    Chun-Xiao Song
    [J]. Nature Biotechnology, 2019, 37 : 424 - 429
  • [5] Bisulfite-free direct detection of 5-methylcytosine and 5-hydroxymethylcytosine at base resolution
    Liu, Yibin
    Siejka-Zielinska, Paulina
    Velikova, Gergana
    Bi, Ying
    Yuan, Fang
    Tomkova, Marketa
    Bai, Chunsen
    Chen, Lei
    Schuster-Bockler, Benjamin
    Song, Chun-Xiao
    [J]. NATURE BIOTECHNOLOGY, 2019, 37 (04) : 424 - +
  • [6] Enzymatic approaches and bisulfite sequencing cannot distinguish between 5-methylcytosine and 5-hydroxymethylcytosine in DNA
    Nestor, Colm
    Ruzov, Alexey
    Meehan, Richard R.
    Dunican, Donncha S.
    [J]. BIOTECHNIQUES, 2010, 48 (04) : 317 - 319
  • [7] Detection and mapping of 5-methylcytosine and 5-hydroxymethylcytosine with nanopore MspA
    Laszlo, Andrew H.
    Derrington, Ian M.
    Brinkerhoff, Henry
    Langford, Kyle W.
    Nova, Ian C.
    Samson, Jenny Mae
    Bartlett, Joshua J.
    Pavlenok, Mikhail
    Gundlach, Jens H.
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2013, 110 (47) : 18904 - 18909
  • [8] Quantitative Sequencing of 5-Methylcytosine and 5-Hydroxymethylcytosine at Single-Base Resolution
    Booth, Michael J.
    Branco, Miguel R.
    Ficz, Gabriella
    Oxley, David
    Krueger, Felix
    Reik, Wolf
    Balasubramanian, Shankar
    [J]. SCIENCE, 2012, 336 (6083) : 934 - 937
  • [9] Distinctive Patterns of 5-Methylcytosine and 5-Hydroxymethylcytosine in Schizophrenia
    Xie, Jiaxiang
    Wang, Yang
    Ye, Changcheng
    Li, Xiao-Jiang
    Lin, Li
    [J]. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2024, 25 (01)
  • [10] Accurate Measurement of 5-Methylcytosine and 5-Hydroxymethylcytosine in Human Cerebellum DNA by Oxidative Bisulfite on an Array (OxBS-Array)
    Field, Sarah F.
    Beraldi, Dario
    Bachman, Martin
    Stewart, Sabrina K.
    Beck, Stephan
    Balasubramanian, Shankar
    [J]. PLOS ONE, 2015, 10 (02):