Minimally destructive sampling of type specimens of Pyropia (Bangiales, Rhodophyta) recovers complete plastid and mitochondrial genomes

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作者
Jeffery R. Hughey
Paul W. Gabrielson
Laurence Rohmer
Jacquie Tortolani
Mayra Silva
Kathy Ann Miller
Joel D. Young
Craig Martell
Erik Ruediger
机构
[1] Science and Engineering,Division of Mathematics
[2] Hartnell College,Herbarium and Department of Biology
[3] University of North Carolina,Department of Microbiology
[4] University of Washington,Department of Computer Science
[5] Campus Box 357710,undefined
[6] Herbarium,undefined
[7] University of California at Berkeley,undefined
[8] Naval Postgraduate School,undefined
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Plant species, including algae and fungi, are based on type specimens to which the name of a taxon is permanently attached. Applying a scientific name to any specimen therefore requires demonstrating correspondence between the type and that specimen. Traditionally, identifications are based on morpho-anatomical characters, but recently systematists are using DNA sequence data. These studies are flawed if the DNA is isolated from misidentified modern specimens. We propose a genome-based solution. Using 4 × 4 mm2 of material from type specimens, we assembled 14 plastid and 15 mitochondrial genomes attributed to the red algae Pyropia perforata, Py. fucicola and Py. kanakaensis. The chloroplast genomes were fairly conserved, but the mitochondrial genomes differed significantly among populations in content and length. Complete genomes are attainable from 19th and early 20th century type specimens; this validates the effort and cost of their curation as well as supports the practice of the type method.
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