Development and characterization of 20 polymorphic microsatellite markers for the Texas hornshell, Popenaias popeii (Bivalvia: Unionidae), through next-generation sequencing

被引:0
|
作者
Kentaro Inoue
Brian K. Lang
David J. Berg
机构
[1] Miami University,Department of Zoology
[2] New Mexico Department of Game and Fish,Department of Zoology
[3] Miami University,undefined
来源
关键词
454 shotgun pyrosequencing; De novo sequencing; Freshwater mussels; Microsatellite primers;
D O I
暂无
中图分类号
学科分类号
摘要
We identified 28 microsatellite loci from Popenaias popeii, a freshwater mussel that has experienced population declines throughout its range. Twenty loci were polymorphic, with 4–10 alleles, observed heterozygosity values of 0.375–1.00, and 16 % of alleles shared by more than one population. These loci should be useful for describing population genetic diversity, which will facilitate ongoing conservation efforts for P. popeii.
引用
收藏
页码:195 / 198
页数:3
相关论文
共 50 条
  • [1] Development and characterization of 20 polymorphic microsatellite markers for the Texas hornshell, Popenaias popeii (Bivalvia: Unionidae), through next-generation sequencing
    Inoue, Kentaro
    Lang, Brian K.
    Berg, David J.
    [J]. CONSERVATION GENETICS RESOURCES, 2013, 5 (01) : 195 - 198
  • [2] New records of the Texas hornshell Popenaias popeii (Bivalvia:Unionidae) from Texas and northern Mexico
    Strenth, NE
    Howells, RG
    Correa-Sandoval, A
    [J]. TEXAS JOURNAL OF SCIENCE, 2004, 56 (03): : 223 - 230
  • [3] Development of polymorphic microsatellite markers for Fagus pashanica (Fagaceae) using next-generation sequencing
    Zhu, Bi-Ru
    Zhang, Xiao-Ya
    Yang, Xiao-Xi
    Liao, Wan-Jin
    [J]. GENES & GENETIC SYSTEMS, 2023, 98 (05) : 277 - 281
  • [4] Development of 11 polymorphic microsatellite markers for Xylocarpus granatum (Meliaceae) using next-generation sequencing technology
    Tomizawa, Yuki
    Shinmura, Yoshimi
    Wee, Alison K. S.
    Takayama, Koji
    Asakawa, Takeshi
    Baylen Yllano, Orlex
    Garengo Salmo, Severino, III
    Ardli, Erwin Riyanto
    Nguyen Xuan Tung
    Malekal, Norhaslinda Binti
    Onrizal
    Meenakshisundaram, Sankararamasubramanian Halasya
    Sungkaew, Sarawood
    Bin Saleh, Mohd Nazre
    Adjie, Bayu
    Soe, Khin Khin
    Oguri, Emiko
    Murakami, Noriaki
    Watano, Yasuyuki
    Baba, Shigeyuki
    Webb, Edward L.
    Kajita, Tadashi
    [J]. CONSERVATION GENETICS RESOURCES, 2013, 5 (04) : 1159 - 1162
  • [5] Development of 11 polymorphic microsatellite markers for Xylocarpus granatum (Meliaceae) using next-generation sequencing technology
    Yuki Tomizawa
    Yoshimi Shinmura
    Alison K. S. Wee
    Koji Takayama
    Takeshi Asakawa
    Orlex Baylen Yllano
    Severino Garengo Salmo
    Erwin Riyanto Ardli
    Nguyen Xuan Tung
    Norhaslinda Binti Malekal
    Sankararamasubramanian Halasya Onrizal
    Sarawood Meenakshisundaram
    Mohd Nazre Sungkaew
    Bayu Bin Saleh
    Khin Khin Adjie
    Emiko Soe
    Noriaki Oguri
    Yasuyuki Murakami
    Shigeyuki Watano
    Edward L. Baba
    Tadashi Webb
    [J]. Conservation Genetics Resources, 2013, 5 : 1159 - 1162
  • [6] Development and characterization of 13 polymorphic microsatellite DNA markers for pink salmon (Oncorhynchus gorbuscha) using next-generation sequencing approach
    Tsukagoshi, H.
    Terui, S.
    Sato, S.
    Abe, S.
    [J]. JOURNAL OF APPLIED ICHTHYOLOGY, 2017, 33 (06) : 1204 - 1207
  • [7] HIGHLY POLYMORPHIC MICROSATELLITE MARKERS IN PULSATILLA VULGARIS (RANUNCULACEAE) USING NEXT-GENERATION SEQUENCING
    DiLeo, Michelle F.
    Graf, Rene
    Holderegger, Rolf
    Rico, Yessica
    Wagner, Helene H.
    [J]. APPLICATIONS IN PLANT SCIENCES, 2015, 3 (07):
  • [8] Development of 16 microsatellite markers in Eusideroxylon zwageri by next-generation sequencing
    Hiroyuki Kurokochi
    Engkong Tan
    Shuichi Asakawa
    Yoko Sukartiningsih
    Yuji Saito
    [J]. Conservation Genetics Resources, 2014, 6 : 593 - 595
  • [9] Development of 16 microsatellite markers in Eusideroxylon zwageri by next-generation sequencing
    Kurokochi, Hiroyuki
    Tan, Engkong
    Asakawa, Shuichi
    Sukartiningsih
    Saito, Yoko
    Ide, Yuji
    [J]. CONSERVATION GENETICS RESOURCES, 2014, 6 (03) : 593 - 595
  • [10] Development and characterization of 29 microsatellite markers for Ligumia nasuta (Bivalvia: Unionidae) using an Illumina sequencing approach
    Scott, Mariah W.
    Hoffman, Jordan R.
    Hewitt, Trevor L.
    Beasley, Rochelle R.
    Lance, Stacey L.
    Jones, Kenneth L.
    Morris, Todd J.
    Zanatta, David T.
    [J]. BIOCHEMICAL SYSTEMATICS AND ECOLOGY, 2016, 66 : 239 - 242